Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2552 atgattttctttcCTACCTACAACGAGCGAATGAATTTTTACAGCTCGATACGATACTCACTCTTGGGACagAGGGATAACGATGGTTTATCTCGCCGGTGCCGGATACATCACAGTCGTCGGAATCAATCATCGGATgccaaaatttttttatcaatcataCCAAACAGCACCATTTCAACGCTCTACGTCGTCGCATCTCTGTGTCGGAGCTGCAGAGAACATGGCTTCAGTAGCGCTTCCGAATCGGCTTGGACAGATTTTCCCGTAGAGAACGCCTACGAGCTGTTAGGAGTGTCCGAGACCAGCTCCTTTGCCGAGATTAAAGCGTCGTTTCGCAAGTTGGCCAAAGAAACTCACCCGGACCTCGCCGAGTCAAGGAACGATTCCAGTGCGTCTCGACGATTTGTACAAATCCTAGCTGCCTACGAGATTCTTTCAGATTGTCAAAAGAGAGCCCATTATGACATGTACCTGTTATCTCAGAAAAAGCTTATGCAAATGCATTCTGGACACAgttcaaaattgcatatttacAAATCACAGGCTACAACGTTCAAGGAGATGGAAGTTGTTGAATGGTTAAAATGGTACAGattaactataaataatattttgtcagAGAAGAAGGTGGTAGTTGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCAGCATACTATGGTCCTGATATTGATTCTATGCCCATGGAGCTTCTTCCTGACTGTTTTGAGGCTGAGGAGAGATCCTCTTATGAAACTCCTGAGGTTTTGCACTTAGTTTCCGGACGTGATCTTTTCGGGATGGTTTGCCTAGTCAACAATGTTCCAGAGATATCAACGACTAATAATGACAAGTTAACTTCTTTTAGATCCTTCCATTCAGGCCCTTGTCAATCTATAACTAATGTGAACGTCCACAGGAATGCAGAAAGACCAGATGATTCTGAAACTCATCAAGGTCACAGCTCTAAAACTTCAAGTATTGTATCAGATGCATATAGACATCTAGAATTGCATATCTCTGGAAGAGTGGTGGCTACAGCATCTAGGGCCCTACCTAGATGCTGTTCTGATGCGATGCAGACAGAACATGCTGAAGATCACATTCATGTGTTCCTTAATTTATATGAAGATCCCAAACATATCAGCAGTGATTTTTGGAAAGATTACCCTGCAAATGGTGCAGTTGGAAGAAGAATTCATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGATGAAGGTTGTTGTTATGTCTACAATGATAAGGGTACGAAGACCCATGTGATTATGAAGCATAGAACATTGATGGTGAAGCATATGCACTGGTATCAAGTGGGTGAGAAAGTTTCAGTTTGTGAGTGTAGGTGCACTAGAGCACGTTTACCCCCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGCTTTCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAAATAAGAATGGTCGTACAATGCCATCACAAAGGTTCTGGGATGGATTGGACTATAGTGAGCATGCTGACAGAAGACTTCATCCAGCCATGTATCTGTTTGCTCTTGCGTATCGGACACTTGATCTTGAATATGCCAAAGCAAGCAAGAAATCATTTAGGAATGTTGTTGGAGCACAAATGTTTCGAATTCTTCATTGGTGCAAGAAACTTGTTCAATAG 1707 0.4107 MIFFPTYNERMNFYSSIRYSLLGQRDNDGLSRRCRIHHSRRNQSSDAKIFLSIIPNSTISTLYVVASLCRSCREHGFSSASESAWTDFPVENAYELLGVSETSSFAEIKASFRKLAKETHPDLAESRNDSSASRRFVQILAAYEILSDCQKRAHYDMYLLSQKKLMQMHSGHSSKLHIYKSQATTFKEMEVVEWLKWYRLTINNILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPDIDSMPMELLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLVNNVPEISTTNNDKLTSFRSFHSGPCQSITNVNVHRNAERPDDSETHQGHSSKTSSIVSDAYRHLELHISGRVVATASRALPRCCSDAMQTEHAEDHIHVFLNLYEDPKHISSDFWKDYPANGAVGRRIHLGTISGLGSSPDEGCCYVYNDKGTKTHVIMKHRTLMVKHMHWYQVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKNKNGRTMPSQRFWDGLDYSEHADRRLHPAMYLFALAYRTLDLEYAKASKKSFRNVVGAQMFRILHWCKKLVQ 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2552 568 PRINTS DnaJ domain signature 131 151 IPR001623 -
Ssu2g2552 568 PRINTS DnaJ domain signature 112 127 IPR001623 -
Ssu2g2552 568 PRINTS DnaJ domain signature 94 112 IPR001623 -
Ssu2g2552 568 Gene3D DnaJ domain 83 180 IPR036869 -
Ssu2g2552 568 ProSiteProfiles dnaJ domain profile. 92 159 IPR001623 -
Ssu2g2552 568 SUPERFAMILY Chaperone J-domain 90 165 IPR036869 -
Ssu2g2552 568 Pfam DnaJ domain 92 156 IPR001623 -
Ssu2g2552 568 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 53 567 - -
Ssu2g2552 568 SMART dnaj_3 91 151 IPR001623 -
Ssu2g2552 568 ProSitePatterns Nt-dnaJ domain signature. 136 155 IPR018253 -
Ssu2g2552 568 CDD DnaJ 92 148 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2552 Ssu-Chr2 84658818 84662893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2552 94 156 C2H2 Transcription Factor Family AT1G74250 43.939 7.60e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2552 - - gmx:100805332 999.579