Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2539 ATGCCTCCCCAAGAGCGCCAACAACCTCTGCTAGCGGCGTCCCGCGAAGGGCCAGAAGATACCGCCTATGATTCCTCGGAGAAGGTGGTGGTGGTCGGAATCGACGAGCACGAGGGTGACGTGGAGGCGCCGCCGTTCTCGTGGAAGAAGCTGTGGCTGTTCACTGGGCCCGGGTTTCTGATGAGCATCGCGTTCCTGGATCCCGGGAACCTCGAGGGGGATCTCCAGTCGGGTGCCATTGCTGGGTACTCGCTGTTGTGGCTTCTCGTGTGGGCCACGGTTATGGGCCTTATTATCCAGCTTCTCTCGGCCCGGCTCGGCGTCGCCACTGGGAGACACTTAGCTGAACTCTGCAGAGAAGAGTACCCTACATGGGCTAGGATTGTGCTCTGGTTGATGACTGAGGTCGCTCTAATTGGCTCTGACATTCAAGAGGTTATTGGGAGCGCTATTGCTATCAGGATTCTCAGTCACGGCGTTGTGCCTCTCTGGGCTGGGGTCGTCGTTACAGCTTTAGATtgtttcatttttctctttcttgagaACTACGGTGTGAGGAAATTGGAAGCGTTTTTCGCTGTTCTGATTGGTGTAATGGCTCTCTCGTTTGCGTGGATGTTCGGTGAAGCAAAGCCCAATGGTCTTGATGTTCTTCTTGGTATTTTGGTTCCTAAACTGAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTCTTGCATTCTGCACTTGTTCAATCAAGGCAGATTGACCCCAGCAAGAAAGGACGTGTTCAGGAAGCTCTTAATTACTACTCAATAGAGTCCACCATCGCCCTTGCAGTGTCCTTGgtcattaatatatttgtcaCAACTGTGTTTGCTAAGGGCTTTTACGGTACTGAAATAGCAAATAGCATTGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGGGGTGGACTATTCCCAATCCTGTATATATGGGGTATTGGATTATTAGCAGCGGGCCAGAGTAGCACAATAACTGGTACATATGCAGGACAATTTATCATGGGTGGTTTTCTGAATTTAAGGTTGAAAAAGTGGATCAGGGCATTAATTACACGAAGTTTTGCAATCATCCCAACCATGATAGTTGCTCTTATGTTTGATACCTCAGAGGACTCATTAGATGTTCTGAATGAATGGCTTAATGTTCTCCAGTCAGTTCAAATCCCCTTTGCACTCATTCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTTTCCTCAAGATTATTTCTTGGCTTGTGGCTGCTCTGGTGATTGTGATAAACGGCTATCTTTTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCACTGTTTGTCACTATAGTGTGTGTATTAACAGCTGCATATGTTGCATTTGTACTTTACCTTATTTCACGGGCCATTACCTTTACACCGTGGCAGAGTTTAACCCGATCAACGACAGTTGCTAGCGCAGAGAATTGA 1533 0.4684 MPPQERQQPLLAASREGPEDTAYDSSEKVVVVGIDEHEGDVEAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLVWATVMGLIIQLLSARLGVATGRHLAELCREEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSHGVVPLWAGVVVTALDCFIFLFLENYGVRKLEAFFAVLIGVMALSFAWMFGEAKPNGLDVLLGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQIDPSKKGRVQEALNYYSIESTIALAVSLVINIFVTTVFAKGFYGTEIANSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSFAIIPTMIVALMFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPFLKIISWLVAALVIVINGYLLLEFFSSEVNGALFVTIVCVLTAAYVAFVLYLISRAITFTPWQSLTRSTTVASAEN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2539 510 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g2539 510 Hamap Divalent metal cation transporter MntH [mntH]. 38 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 14 509 - -
Ssu2g2539 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 14 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu2g2539 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2539 Ssu-Chr2 84476787 84479973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2539 1 503 Inorganic Solute Cotransporters AT2G23150 77.451 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2539 K21398 - gmx:100807811 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2539 2 84476787 84479973 Ssu6g1826 6 31406608 31410199 PCT