Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2533 atgAATACAGGCACAGGCGTGAGCAGAAAGGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGATGCCCTGCAGAAGCTGGTGGAGAAACACGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATTCCGGGCCGGTCCGGCAAGTCGTGCAGGCTCCGGTGGTGCAACCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACGTCCGAAGAGGACGAGACCATAATCCGGGCCCACGCCCGGTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCCACGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCCACCCTGAAGCGCAAGTGCGCTTCCATGATGATGGACGACCCTCAACCGCTGAAGAGGTCCGTGAGTGCCGGCGCCGCCATCCCAGTCTCCACCGGACTCTACATGAACCCGCCCACACCGGGTAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTACCGGTTGCGTCCTCCTCCCACGTGTTCCGACCCGTGGCTAGGACCGGCGGGGTTCTACCGCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACCTCGCTATCCCTATCCCTCCCCGGCGTGGACTCTTCCGAAGTCTCCAATCGTACGACAGAACCAATCCATGCCGCTCCTCCGCCTCCGCAGGCACCGTCGATTACTATTCCTTTGCTGCCAATGATGGCGGCTCCGGTGGCGGTGCCGCCGGTTTCGCCGACGGGGTCGGGGGCGTTTAATTTAAGTGCAGAGTTTCTTGTTGTCATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCGGCAGAATCAGAATGGAATGTGTTTTCACGCGGCGGATGATGGGTTTAGGAACGCTTCTGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTAA 933 0.5991 MNTGTGVSRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTSEEDETIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCASMMMDDPQPLKRSVSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVPVASSSHVFRPVARTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRTTEPIHAAPPPPQAPSITIPLLPMMAAPVAVPPVSPTGSGAFNLSAEFLVVMQEMIRKEVRSYMERQNQNGMCFHAADDGFRNASVKRIGISRIDS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2533 310 MobiDBLite consensus disorder prediction 143 227 - -
Ssu2g2533 310 SMART sant 15 64 IPR001005 -
Ssu2g2533 310 SMART sant 67 115 IPR001005 -
Ssu2g2533 310 MobiDBLite consensus disorder prediction 9 23 - -
Ssu2g2533 310 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 226 - -
Ssu2g2533 310 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Ssu2g2533 310 Gene3D - 15 67 - -
Ssu2g2533 310 MobiDBLite consensus disorder prediction 184 216 - -
Ssu2g2533 310 MobiDBLite consensus disorder prediction 1 23 - -
Ssu2g2533 310 MobiDBLite consensus disorder prediction 146 169 - -
Ssu2g2533 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Ssu2g2533 310 CDD SANT 18 60 IPR001005 -
Ssu2g2533 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu2g2533 310 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
Ssu2g2533 310 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Ssu2g2533 310 CDD SANT 70 113 IPR001005 -
Ssu2g2533 310 Gene3D - 69 133 - -
Ssu2g2533 310 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Ssu2g2533 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Ssu2g2533 310 PANTHER MYB PROTEIN-RELATED 8 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2533 Ssu-Chr2 84338764 84339696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2533 8 309 MYB Transcription Factor Family AT4G37260 52.711 9.90e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g2533 Myb_DNA-binding 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2533 K09422 - gmx:780556 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2533 2 84338764 84339696 Ssu5g1542 5 48351029 48351952 PCT
Ssu6g1842 6 31799386 31800330 Ssu2g2533 2 84338764 84339696 PCT