Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2526 ATGGAACCAGCTTCAGCTGATTCTTCATCTCAACCTACTCCTTCAGTTTCTAATACTGAAGAACAACACCCAAACAAAGTGTCTGGACAAATTGGCAATGCGCATGATTCACCATCATCGTTACCCGCTTCTGGCATATCATCCTGGGCAAGACATCTGAAATTCCCACAGGCCCTTGGGCTTGGAGGAGCACAACAGAATTCACAGACCGAAAACACTGGCATGTCAGCTTTTGCTCACCTGACTGGTGGGCTTGGATTGCAAACGCCGTCAAATGAAACTGCTGCTCCAGCCAATTCAGGAACCGAGCAATCTAATTTGATTGAATCCTTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTTAAGGCGGTGCAGGTCAAAGCACGCCATATGGTCTCTCAAAATAAGCGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATTACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTAAGCTCCGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAAGTTTTTTGAAACACATCATAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAAAGGTTATACGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTGAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTGGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTAgtcttcttttgtttcttaagTTCTTCCCGACTGCAGAGGAAGCCATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTTATCCCTAGTCAGATCagatatgTAAAATACTTTGGACGGACTTTAACACACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTACGAGGGTTTCGGCTTCACAAATGCCCTTACTGGGTTAGACCATCTATTACAATTTCTGATCATAATGGAATTCTTTTTACCACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCGCCAAAGAAAGGAATTGTGGTTTTTGCACTACCAGGAGAGCCTGGTCTGGCAGAGTTGGTTGGAGActtcaaaattcattttcatgATCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAACCGAAAAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGAAAAATCCCCGCTCCAGGATTCCAGGTGGAAGTTGTGATGATTGACTATAATGGCACCCTACCTGCAAGGACAAAATCCAATCCTGCCAGCAAAGGATCTGATGGAAACACAAGCAATGCCCTACCTGGTCCAAAGCCTACTACGTCTAATTCAAGTGAGAGTAAAGTCCCTAGAAATGGAGATGATGATGTATTCTCAGACAGTGACGAAGAGGAGACCCGGGATACACAAAGCAAGAAAGGTACAACTGAGTACAAATTTATTGCACCTCATCAAGTATCTGAGGCAACAACAGACCACGTAGGGATGTTGGCACATACAACGGATCAGTTGTCGCTACAGCATGAGGAACGCACGCAAAACAACGCTTCTGAAGAATCAACTAGAgataaacttaataaaattcatgCAGGCAATAAGAGCACAAACATGGGATCTGTAGGGGCAAATGAAATCAAGGCAATTGCAGCAGATGCTTCTGTTTTTTCCTTTGGAGATGATGAAGATTTTGAAAGTGATTGA 1830 0.4115 MEPASADSSSQPTPSVSNTEEQHPNKVSGQIGNAHDSPSSLPASGISSWARHLKFPQALGLGGAQQNSQTENTGMSAFAHLTGGLGLQTPSNETAAPANSGTEQSNLIESFTKGLVDSSKSAVKAVQVKARHMVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDLSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIELIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNHKRCVDGKALVIPSQIRYVKYFGRTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTRKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLAELVGDFKIHFHDRQGDFYCWMNTTMTENRKILDGSDFDGFDKRKIPAPGFQVEVVMIDYNGTLPARTKSNPASKGSDGNTSNALPGPKPTTSNSSESKVPRNGDDDVFSDSDEEETRDTQSKKGTTEYKFIAPHQVSEATTDHVGMLAHTTDQLSLQHEERTQNNASEESTRDKLNKIHAGNKSTNMGSVGANEIKAIAADASVFSFGDDEDFESD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2526 609 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Ssu2g2526 609 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Ssu2g2526 609 SMART PTEN_C2_2 323 451 IPR014020 -
Ssu2g2526 609 MobiDBLite consensus disorder prediction 82 104 - -
Ssu2g2526 609 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Ssu2g2526 609 MobiDBLite consensus disorder prediction 85 104 - -
Ssu2g2526 609 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 12 609 - -
Ssu2g2526 609 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Ssu2g2526 609 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 253 292 IPR000387 GO:0016311|GO:0016791
Ssu2g2526 609 MobiDBLite consensus disorder prediction 459 491 - -
Ssu2g2526 609 MobiDBLite consensus disorder prediction 1 45 - -
Ssu2g2526 609 MobiDBLite consensus disorder prediction 459 526 - -
Ssu2g2526 609 MobiDBLite consensus disorder prediction 555 572 - -
Ssu2g2526 609 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 12 609 - -
Ssu2g2526 609 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Ssu2g2526 609 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 317 IPR029021 -
Ssu2g2526 609 MobiDBLite consensus disorder prediction 546 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2526 Ssu-Chr2 84187465 84194514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2526 36 609 Protein tyrosine phosphatase (PTP) family AT3G19420 61.785 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2526 K01110 - gmx:100801622 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2526 2 84187465 84194514 Ssu7g0436 7 8242467 8255125 PCT