Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2521 ATGGCCGTGGAGCTCATGATGGGGTATAGGAACGACAATTTCGCGGAAGAGAATGCGGTTCGTGAAGCTGCGTCTGGATTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACAGACTCAACAATATCAGACGACATCGAATTCAACTTCAAAGTCTTCCATGGAAATTGAGACCGACTACAGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTGATTTCGCTCCTGGGCCGAACCAGAACCGGTCACGCTCGTTTTAGAAGAGCCCCTGTGGCTCCCCCTCCTGCGGAACCGAGAGTCTATCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACGCTCACGCGGACCACGCTCTGATCCCGCAAAATGGGGTGATTGAGAGAAAGGACGCTTCCAAGACCATTAATTTCTCGTATTCAAATTCATTCGTCTCGTCCCTCACCGGCGACACCGACACGAAACAGCCGTGCTCGTCGTCAACGGCGACGGCGACGGCGACGGCTTTTCAGATCACGAATCTCTCTCAATCTCATGTCTCCTCCGCGGGAAAGCCTCCTTTGTCTTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCTGGCCGATGCCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAGAGGATGGTGAGGGTACCTGCAATTAGCTTGAAGATGGCTGATATTCCACCCGATGATTATTCTTGGAGGAAATACGGACAGAAACCAATTAAAGGATCTCCTCATCCAAGAGGTTATTACAAGTGTAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCACGTTGAGCGGGCTCTGGATGATCCATCTATGTTGGTAGTCACATATGAAGGCGAGCACAATCACACACTCTCTGCGGCCGAGCCTACTAATCTTATCCTAGAATCGTCTTAA 960 0.5135 MAVELMMGYRNDNFAEENAVREAASGLESVEKLIRLLSQTQQYQTTSNSTSKSSMEIETDYRAVADVAVSKFKKVISLLGRTRTGHARFRRAPVAPPPAEPRVYRATPLQQIPPPTLHAHADHALIPQNGVIERKDASKTINFSYSNSFVSSLTGDTDTKQPCSSSTATATATAFQITNLSQSHVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSGRCHCSKKRKMRLKRMVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEPTNLILESS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2521 319 SUPERFAMILY WRKY DNA-binding domain 243 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g2521 319 Pfam WRKY DNA -binding domain 248 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2521 319 Pfam Plant zinc cluster domain 199 244 IPR018872 -
Ssu2g2521 319 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 13 319 - -
Ssu2g2521 319 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2521 319 Gene3D WRKY domain 232 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g2521 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 319 IPR044810 GO:0003700
Ssu2g2521 319 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2521 Ssu-Chr2 84113048 84114445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2521 1 304 WRKY Transcription Factor Family AT2G24570 43.155 2.90e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g2521 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2521 - - gmx:100127371 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2521 2 84113048 84114445 Ssu6g0678 6 10534589 10535843 PCT
Ssu6g1851 6 32001995 32003320 Ssu2g2521 2 84113048 84114445 PCT