Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2514 atggagggtgaaggaggagagagagaaacaacGAAGAAGCGAGGCGTGGAGGGTGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGGGAACCAAATAAGCGTTCCAGGATTTGGCTTGGTTCCTATTCCACCCCTGTCGCCGCCGCACGTGCCTACGACACCGCCGTTTTTTATCTCCGGGGACCCTCCGCGCGCCTTAACTTCCCGGAGCTGTTCGTTGGAGAAGGCGCCGCCGTCGTCGCCGGCTGCGACATGTCAGCGGCTTCTATTAGGAAGAAGGCCACCGAGGTTGGTGCTAGAGTCGATGCTCTCCAGGCAAcccttcaccaccaccaccgtgtGCCGCCGTCGCCGGAGATTCTCTCCGGCGGAGGAGGCGGCGGCTCCGGGGATTTCGCCGAGCGGGTTGACCTGAATAAGATGCCCGAACCCGAGAGTTCGGACTGTGAGTGGGACGTGAATTGA 492 0.5305 MEGEGGERETTKKRGVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELFVGEGAAVVAGCDMSAASIRKKATEVGARVDALQATLHHHHRVPPSPEILSGGGGGGSGDFAERVDLNKMPEPESSDCEWDVN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2514 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 1 157 - -
Ssu2g2514 163 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Ssu2g2514 163 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Ssu2g2514 163 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Ssu2g2514 163 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Ssu2g2514 163 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Ssu2g2514 163 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Ssu2g2514 163 MobiDBLite consensus disorder prediction 121 163 - -
Ssu2g2514 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 157 - -
Ssu2g2514 163 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Ssu2g2514 163 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2514 Ssu-Chr2 84028688 84029179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2514 11 161 AP2-EREBP Transcription Factor Family AT5G67190 57.714 3.36e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu2g2514 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2514 K09286 - gmx:100527066 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2514 2 84028688 84029179 Ssu6g1858 6 32109638 32110069 PCT