LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2511	ATGTGGGATCTGAATGACTCCCCCGATCAGCGAAAGGACTACGAATCCGAAGGATGCTCTTCTTCCCTCAATGATGACAAAGGCAAGAGAGTGGGATCTGTTTCCAATTCGAGCTCCTCCGCGGTGCTCGTTGAAGATGGATCCGAGGAAGAAGACAGTGACAGGGGCGGAAGGAGAACATTGGAGAAAAAAAGCAGCAAAATATTCGGATTCTCTGTTACCCATGATGACAGTGACCACCCACCCGTGACCCGCCAGTTTTTCCCGGTGGAGGAttccgccgccgccgccgccgaaAGCAGAAACGGAAGCTCCTTCCCACGCGCTCACTGGGTGGGcgtcaaattttgtcaatcGGAAACACTCGCCGCCGGAAAAGCAGTGAAAGTGTCGGAGCCGATGAAGAAAAGTCGCCGTGGACCACGCTCGCGGAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGGGGGGTGGAGGCGGACATCAACTTCAACATAGAGGACTATGAGGAAGACTTGAAACAGATGAGCAATCTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGATAATGAACTTAATCCTGAATCCTCAGGTGTCGGTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAACATAGCAATAGTCAAACATCGGGGAATCACCTCCCAAATGCTGCAACCGATCAGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGGTTCATCTGGTAAATATACTACCAAAACCATGTGGCAGAAGCAACATGGAAGCCTATGGACACGGGGAGAGTGAAGCCTTGAGGCAGCTGAGTCAAACTCACCTTCAATCTCCAGCCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCATGCAGAGCCTCAAGTGCCTCACAATTTTGCACATCTTCACCCACCAAATTTTCATGTTCCTAGCAGCAGCAACGGAGGCCGTATTGGAAGTGATCTTTCATTATCAATGTCCGATCAACAACAGTGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCTTCCTGA	1488	0.4778	MWDLNDSPDQRKDYESEGCSSSLNDDKGKRVGSVSNSSSSAVLVEDGSEEEDSDRGGRRTLEKKSSKIFGFSVTHDDSDHPPVTRQFFPVEDSAAAAAESRNGSSFPRAHWVGVKFCQSETLAAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPESSGVGADHNLDLSLGNSSSKHSNSQTSGNHLPNAATDQHMPPESNWRNGGSKPKVHLVNILPKPCGRSNMEAYGHGESEALRQLSQTHLQSPATKEMHRYGPYRSHAEPQVPHNFAHLHPPNFHVPSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPPQIRPSQGWLQKNGFHSLMRPS	495

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g2511	495	MobiDBLite	consensus disorder prediction	303	362	-	-
Ssu2g2511	495	MobiDBLite	consensus disorder prediction	1	62	-	-
Ssu2g2511	495	ProSiteProfiles	AP2/ERF domain profile.	239	296	IPR001471	GO:0003700\|GO:0006355
Ssu2g2511	495	CDD	AP2	238	298	IPR001471	GO:0003700\|GO:0006355
Ssu2g2511	495	SMART	rav1_2	147	209	IPR001471	GO:0003700\|GO:0006355
Ssu2g2511	495	SMART	rav1_2	239	302	IPR001471	GO:0003700\|GO:0006355
Ssu2g2511	495	SUPERFAMILY	DNA-binding domain	238	298	IPR016177	GO:0003677
Ssu2g2511	495	MobiDBLite	consensus disorder prediction	318	352	-	-
Ssu2g2511	495	MobiDBLite	consensus disorder prediction	26	44	-	-
Ssu2g2511	495	CDD	AP2	147	204	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2511	Ssu-Chr2	83968698	83971445	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2511	1	332	AP2-EREBP Transcription Factor Family	AT4G36920	69.452	2.42e-138	404

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Ssu2g2511		AP2	3.4e-10	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2511	K09284		-	gmx:100786333	845.884

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2511	2	83968698	83971445	Ssu6g1860	6	32189384	32192350	PCT

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