Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2511 ATGTGGGATCTGAATGACTCCCCCGATCAGCGAAAGGACTACGAATCCGAAGGATGCTCTTCTTCCCTCAATGATGACAAAGGCAAGAGAGTGGGATCTGTTTCCAATTCGAGCTCCTCCGCGGTGCTCGTTGAAGATGGATCCGAGGAAGAAGACAGTGACAGGGGCGGAAGGAGAACATTGGAGAAAAAAAGCAGCAAAATATTCGGATTCTCTGTTACCCATGATGACAGTGACCACCCACCCGTGACCCGCCAGTTTTTCCCGGTGGAGGAttccgccgccgccgccgccgaaAGCAGAAACGGAAGCTCCTTCCCACGCGCTCACTGGGTGGGcgtcaaattttgtcaatcGGAAACACTCGCCGCCGGAAAAGCAGTGAAAGTGTCGGAGCCGATGAAGAAAAGTCGCCGTGGACCACGCTCGCGGAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGGGGGGTGGAGGCGGACATCAACTTCAACATAGAGGACTATGAGGAAGACTTGAAACAGATGAGCAATCTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGATAATGAACTTAATCCTGAATCCTCAGGTGTCGGTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAACATAGCAATAGTCAAACATCGGGGAATCACCTCCCAAATGCTGCAACCGATCAGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGGTTCATCTGGTAAATATACTACCAAAACCATGTGGCAGAAGCAACATGGAAGCCTATGGACACGGGGAGAGTGAAGCCTTGAGGCAGCTGAGTCAAACTCACCTTCAATCTCCAGCCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCATGCAGAGCCTCAAGTGCCTCACAATTTTGCACATCTTCACCCACCAAATTTTCATGTTCCTAGCAGCAGCAACGGAGGCCGTATTGGAAGTGATCTTTCATTATCAATGTCCGATCAACAACAGTGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCTTCCTGA 1488 0.4778 MWDLNDSPDQRKDYESEGCSSSLNDDKGKRVGSVSNSSSSAVLVEDGSEEEDSDRGGRRTLEKKSSKIFGFSVTHDDSDHPPVTRQFFPVEDSAAAAAESRNGSSFPRAHWVGVKFCQSETLAAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPESSGVGADHNLDLSLGNSSSKHSNSQTSGNHLPNAATDQHMPPESNWRNGGSKPKVHLVNILPKPCGRSNMEAYGHGESEALRQLSQTHLQSPATKEMHRYGPYRSHAEPQVPHNFAHLHPPNFHVPSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPPQIRPSQGWLQKNGFHSLMRPS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2511 495 MobiDBLite consensus disorder prediction 303 362 - -
Ssu2g2511 495 MobiDBLite consensus disorder prediction 1 62 - -
Ssu2g2511 495 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 CDD AP2 238 298 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 SMART rav1_2 147 209 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 SMART rav1_2 239 302 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 SUPERFAMILY DNA-binding domain 238 298 IPR016177 GO:0003677
Ssu2g2511 495 MobiDBLite consensus disorder prediction 318 352 - -
Ssu2g2511 495 MobiDBLite consensus disorder prediction 26 44 - -
Ssu2g2511 495 CDD AP2 147 204 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 ProSiteProfiles AP2/ERF domain profile. 147 203 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g2511 495 SUPERFAMILY DNA-binding domain 146 204 IPR016177 GO:0003677
Ssu2g2511 495 Pfam AP2 domain 238 287 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 Pfam AP2 domain 147 195 IPR001471 GO:0003700|GO:0006355
Ssu2g2511 495 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 493 - -
Ssu2g2511 495 Gene3D AP2/ERF domain 146 205 IPR036955 GO:0003700|GO:0006355
Ssu2g2511 495 Gene3D AP2/ERF domain 238 297 IPR036955 GO:0003700|GO:0006355
Ssu2g2511 495 MobiDBLite consensus disorder prediction 476 495 - -
Ssu2g2511 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2511 Ssu-Chr2 83968698 83971445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2511 1 332 AP2-EREBP Transcription Factor Family AT4G36920 69.452 2.42e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu2g2511 AP2 3.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2511 K09284 - gmx:100786333 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2511 2 83968698 83971445 Ssu6g1860 6 32189384 32192350 PCT