Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2508 ATGGCGTCGAAGCCTTCGCCTTCGCCTTCTTCTTCCAGATCGGAGCCCCTCGTCGATCCCTCCGCAAAGAAAGTGGAGGCTGCAAGTCCGACTGTTAAAGATGTGTTACTGGTAATTGATTCTTTAAAGAAACAAGTTGCTGCGGAACGGATTGTTTATGTAAAGAAAAGAATAGAGGAGAACAGACAGAAGCTGGTTGGTGTCACAAACCAGCTCTGCAAAATGTCAATCGAGAGAAGGAACTGCAGCATTACTGATACAAATAGAAGTCTGGACCTACTGACGAAGAGACAAAAAGATGCAATTGATATGCACAATGGTGTTCATACAAGTAATGGTGATGTGGAGAGCAATGGCTATCATGAAGAAAGCCATGGTTCTACCGCAGTTCTTCTAGGCTCTAATGTTGCTGTGAAGAATGCTGTTCGTCCTATCAAGTTACCTGAAGTAAAAAGATTGCCTCCTTACACTACATGGATTTTTCTGGACAGAAATCAAAGAATGACCGAGGATCAGTCAGTTGTAGGCCGGAGACGAATATATTATGATCAAAATGGTGGAGAAGCACTTATCTGCAGTGACAGTGAGGAGGAAATTATGGAggatgaagaggaaaaaaaagaatttatagaaTCAGAAGATTATATACTTCGCATGACTGTCAAAGAATTTGGTTTATCTGACATTGTTCTGGAGTCCTTGGCTCAGTGTTTTTCAAGAAACACTAGtgaaattaagGCAAGGTATGAAATTCTTAGTATTCAAGACAATGCTGGTGGGTGTTCCAAGGCTGGAGATTCTGAAGAGAATTCTCAAAGTGGCAATTCTTTTCTGGAAAAGGATCTTGAAGCAGCTCTTGACTCTTTTGACAACCTCTTTTGTCGACGATGTCTTGTTTTTGATTGTAGATTACATGGATGTTCACAGGATCTTGTCTTCCCTGCTGAGAAACAACCTATATGGATCCCTCCTGATACTGAAAATGCACCATGTGGGCCAAATTGTTTCCGATCGGTACTTAAGTCAGAAAGATTTGCCAAAACATCCTCTGCCCAGGCTGATGGTGAAGAGAAATGCTCCAGTGGTGCTTTATCAAGGAAAAAATCTTCTGCTAAAAGGCGGATAAAAGGCAGCCAAAGTGAAAGTGCTTCATCTAATGCAAAGAACATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACGAGATGCTGTTTCAGCCTCTCACTCAGCACCTCCTAAAACTAAACCTGTGGGGAAAGGTGGAATTGGTAAGAGGAACAGTAAGCGAGTGGCAGAACGAGTCCTAGTTTGCATGCAGAAACGGCAGAAGAAAACAATGGTTTCTGATTCTGATTCCATTAGTGAAGCTCCTGACCGTTCATCGAATGATATGGTCACTGACCCACATGCCATGAGCAGTGAAGACAACACGAGGAAAGAAGAATTTGTAGATGACAATGTTTGTAAACAAGAAATCACAGATAATAAATCTTGGAAAGCTCTTGAAAAGGGGCTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGGAATCTCTTAAATGGTCTAAAGACATGTTGGGATGTTTTCCAATACATAAATTGTGAAGAAGGAAAGATGTCTGGTCCTCCCGGGGATGTTGCAAACTCCCTCATGGAAGGCTATTCCAAGGGTAATAATGAAGTGAGACGAAGGTCTAGATTTCTACGTAGAAGAGGAAGAGTCCGTCGATTGAAGTACACCTGGAAATCTGCTGCTTATCATTCAATTAGGAAAAGGATTACAGAGAGAAAGGATCAGCCCTGCCGGCAGTATAATCCATGTGGTTGCCAATCAGCTTGTGGAAAACAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGATGTCATTGTGCTAAGAGTCAATGCCGAAGTCGTCAATGTCCATGCTTTGCTGCAGATAGGGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGTTGTGGTGATGGTACTCTTGGGATTCCTAGCCAAAGAGGGGACAATTATGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAGGGTTCTTCTTGGAAGGTCTGATGTATCAGGCTGGGGAGCCTTCTTAAAGAATAGTGTTGGTAAGCATGAATACCTCGGAGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGATCGTGAAAATTcatcttttctctttaatttgaaCGATCAGTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCATTCTCCTGATCCGAATTGCTATGCAAAGGTTATTATGGTTGCTGGAGATCACAGGGTAGGCATTTTTGCCAAGGAAAGGATTTGTGCCGGGGAGGAACTGTTCTATGATTATCGTTATGAGCCCGATAGGGCTCCTGCCTGGGCACGGAAGCCGGAGGCATCTGGATCAAAAAAGAGGACGGGGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAATGGGAGTttgttcaaaaatcaaaaatcaattctttCAGTTATTCTTTCACACGTAGGGGAAGCATTCTCATTGGTAGcggaaagatttttttttttttag 2682 0.4131 MASKPSPSPSSSRSEPLVDPSAKKVEAASPTVKDVLLVIDSLKKQVAAERIVYVKKRIEENRQKLVGVTNQLCKMSIERRNCSITDTNRSLDLLTKRQKDAIDMHNGVHTSNGDVESNGYHEESHGSTAVLLGSNVAVKNAVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEEIMEDEEEKKEFIESEDYILRMTVKEFGLSDIVLESLAQCFSRNTSEIKARYEILSIQDNAGGCSKAGDSEENSQSGNSFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPIWIPPDTENAPCGPNCFRSVLKSERFAKTSSAQADGEEKCSSGALSRKKSSAKRRIKGSQSESASSNAKNISESSDSENGPGRDAVSASHSAPPKTKPVGKGGIGKRNSKRVAERVLVCMQKRQKKTMVSDSDSISEAPDRSSNDMVTDPHAMSSEDNTRKEEFVDDNVCKQEITDNKSWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEEGKMSGPPGDVANSLMEGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCPCLQNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPAWARKPEASGSKKRTGLLQVVVQRSLLNGSLFKNQKSILSVILSHVGEAFSLVAERFFFF 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2508 893 ProSiteProfiles SET domain profile. 711 826 IPR001214 GO:0005515
Ssu2g2508 893 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 8 456 - -
Ssu2g2508 893 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 469 847 - -
Ssu2g2508 893 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 8 456 IPR045318 GO:0006338|GO:0018024
Ssu2g2508 893 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 469 847 IPR045318 GO:0006338|GO:0018024
Ssu2g2508 893 MobiDBLite consensus disorder prediction 1 25 - -
Ssu2g2508 893 MobiDBLite consensus disorder prediction 376 403 - -
Ssu2g2508 893 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 876 IPR025778 GO:0031519
Ssu2g2508 893 MobiDBLite consensus disorder prediction 439 480 - -
Ssu2g2508 893 SMART set_7 711 832 IPR001214 GO:0005515
Ssu2g2508 893 Coils Coil 192 213 - -
Ssu2g2508 893 CDD SET_EZH 711 827 - -
Ssu2g2508 893 ProSiteProfiles CXC domain profile. 597 696 IPR026489 -
Ssu2g2508 893 SMART CXC_2 645 682 IPR033467 -
Ssu2g2508 893 MobiDBLite consensus disorder prediction 450 472 - -
Ssu2g2508 893 Pfam SET domain 722 825 IPR001214 GO:0005515
Ssu2g2508 893 SUPERFAMILY SET domain 585 831 IPR046341 -
Ssu2g2508 893 MobiDBLite consensus disorder prediction 356 426 - -
Ssu2g2508 893 MobiDBLite consensus disorder prediction 1 17 - -
Ssu2g2508 893 Pfam CXC domain 649 680 IPR041355 -
Ssu2g2508 893 Gene3D SET domain 611 828 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2508 Ssu-Chr2 83903032 83912220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2508 700 829 C2H2 Transcription Factor Family AT2G23740 27.211 7.68e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu2g2508 SET 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2508 - K11430 gmx:100799832 1595.87