Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2505 ATGGCTATCACTAAGGAAGAGCAACAACAAAACCAAATCGCTGGCCACAAAGAACTCGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATGAGTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGGAACCTAATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTACTTAAGCTTATCAATGCCAAGAACACCATGGAAATAGGCGTCTACACTGGTTACTCGTTGCTTTCCACTGCCCTCGCCCTCCCATCTGACGGAAAGATCTTAGCTATGGATGTTAACCGGGAATATTATGAACTGGGGTTGCCTGTGATTCAAAAGGCCGGAGTGGCTCACAAGATTGACTTTAGAGAAGGACCTGCTCTTCCTATTCTTGACGAACTGATCAAAGACGAAAAGAATAAGGGAACGTTCGATTTCATCTTCGTGGATGCTGATAAGGACAACTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGGTTGGGGGAGTGATCGGCTACGACAACACCCTGTGGAACGGGTCCGTGGTGGCCCCACCCGATGCGCCTCTCATGAATTATATTAGGTATTATCGCGATTTTGTCATGGAGCTCAACAAAGCTCTTGCACTTGATTCAAGGGTCGAGATTTGCCAGCTTCCAGTCGGTGATGGCATTACCCTGTGCCGCCGCATCAGCTGA 747 0.4779 MAITKEEQQQNQIAGHKELGHKSLLQSDALYEYILETSVYPREHESLKELRELTEKHPWNLMATPPDEGQLLGMLLKLINAKNTMEIGVYTGYSLLSTALALPSDGKILAMDVNREYYELGLPVIQKAGVAHKIDFREGPALPILDELIKDEKNKGTFDFIFVDADKDNYLNYHKRVIELVKVGGVIGYDNTLWNGSVVAPPDAPLMNYIRYYRDFVMELNKALALDSRVEICQLPVGDGITLCRRIS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2505 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Ssu2g2505 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Ssu2g2505 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 2 247 - -
Ssu2g2505 248 PANTHER O-METHYLTRANSFERASE-RELATED 2 247 - -
Ssu2g2505 248 Gene3D Vaccinia Virus protein VP39 22 248 IPR029063 -
Ssu2g2505 248 CDD AdoMet_MTases 86 187 - -
Ssu2g2505 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2505 Ssu-Chr2 83886860 83888441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2505 6 248 Monolignol Biosynthesis Gene Families AT4G34050 80.658 4.46e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2505 K00588 - gmx:100799303 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2505 2 83886860 83888441 Ssu6g1870 6 32380508 32382188 PCT