Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2504 ATGGGTGACATGTACCGCTTTGACAAAAACCTCTCTTCACAGGACGAAATCTCACTTTTCCTGCGTCAGATTCTGCTCCgttcatcatcatcttcttcttcgcACTCCATGCCTGGATCCTGCAACCCCAACGCTGCGCACCCTTCTTTCACAGCGTCACCGCTCCAAGATGGGAAGATCTCGGCCCTTGATTCCAACGCTTCTTTTGTGTCGGGTTCTGGCGCTTGCACTTCCATCAAGGGCCAGGGTGCTTCTGCTGCAAATGTGTCTTCTTCGTCTGTTGGAGTGAGTGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAGGCATTCGCTGAAGAAGTTCCAACAAAGCCTGCTCTTTCTAGGAGTTCGTCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACGGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTTTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAAGCTTGCAGCCTCTGCAGTTGTCTCAGATGAGTATGGAATTAAGTGAGAGAAACAGATCTACCCATTTAAACATGACAGCTACTCTGCCTCTGCACCAAGAGAACCCCTTGCACTATGCATCCAATCTACCTGACAAACACACTGTGCCAAATCAGCCACCAGCGCCCTATCCTCCATACATTAACAGCTCAGAAACTTCTTTCGGGCTGGAATCCCGAATCCAACCGGATATAAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCGATGCGTGGGGAAGACATTTTGCAGTACCAGCAATCAAGTGCTATCCATTCAGATACCAATACATTAGGTGGTTCTCAATTTGTCGAGGAATTCGAGTCAGGCACGACAGTATCACTCCCTTTTGACACGCAAACATGTGAACCTAAAGACAACAAGTCTTTGCACACATGCATTGGCGGAAGAGATCAGTCAGGAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCACGGTTAAGTAGGTAA 1137 0.4459 MGDMYRFDKNLSSQDEISLFLRQILLRSSSSSSSHSMPGSCNPNAAHPSFTASPLQDGKISALDSNASFVSGSGACTSIKGQGASAANVSSSSVGVSENENDDYDCESEEGVEAFAEEVPTKPALSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPESLQPLQLSQMSMELSERNRSTHLNMTATLPLHQENPLHYASNLPDKHTVPNQPPAPYPPYINSSETSFGLESRIQPDIKPLQHKGGSSEPMRGEDILQYQQSSAIHSDTNTLGGSQFVEEFESGTTVSLPFDTQTCEPKDNKSLHTCIGGRDQSGVIIRNSEANIVVTSRLSR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2504 378 CDD bHLH_AtPIF_like 135 196 - -
Ssu2g2504 378 MobiDBLite consensus disorder prediction 121 146 - -
Ssu2g2504 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Ssu2g2504 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 194 IPR036638 GO:0046983
Ssu2g2504 378 SMART finulus 140 189 IPR011598 GO:0046983
Ssu2g2504 378 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 314 IPR031066 -
Ssu2g2504 378 MobiDBLite consensus disorder prediction 132 146 - -
Ssu2g2504 378 PANTHER TRANSCRIPTION FACTOR SPATULA 12 314 - -
Ssu2g2504 378 MobiDBLite consensus disorder prediction 30 53 - -
Ssu2g2504 378 Coils Coil 173 193 - -
Ssu2g2504 378 Gene3D - 129 193 IPR036638 GO:0046983
Ssu2g2504 378 Pfam Helix-loop-helix DNA-binding domain 138 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2504 Ssu-Chr2 83867435 83870280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2504 12 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.165 1.41e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g2504 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2504 - - gmx:100793754 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2504 2 83867435 83870280 Ssu6g1871 6 32522167 32528335 PCT