Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2502 ATGGCGGATGCGGAGCCAGTAAGCGGAAGGCGAAGGCCCCGGGGACCGGAGGCCACCCCCCGGAGCGAAGCCTTGGAGCGCCTGAAGGCCCGCCTCCGCGGCGGTCGTCGATCCGACGGCACCGGGCCCCAAATCAGGTTAGAAAACCCTATCTACGACACCGTCCCCGAGGACGAGTACAACGCCCTCGTCGCCGAGCGCCGCGAGCAGGCGCGCTCCTTCATCGTCGACGATGAAGGACTCGGCTACGGCGACGAGGGCGAGGAAGAGGACTGGTCGCAGGCCGGGTTCACCCTCTCCTCCGACGAATCCGAAGGCGAATCGGAGAGGCCGAAACGGAAGAAGGTCGAGAAGAAGGACCCCCAGCCGAAACGACACTCTTCTTCGCTCTCCGCCGCCGCGGCCATGATGGGCCGCCAGAGGCTCTCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGCAGAGACGACAAGGCCTGCGACAGCATCGTTGATGATGTTATCGCGGAAAGGGCGCAAAAGCAAACGAATCCCTCTTCTGTCTCAGACGATGCTTTGCATAAGCCTTCTGTTGATTTGATCGGAGCTGCATCGTTGCCGGCAGATGATAATATTGAGTCTATTAAGGTTGTCGTTGAGAGTAACGACTTGGACTCGGGGTTAGAGCAAAATTGCGAGGTGGTTAGTGAAATTGAAGAGAGGGCACCAATGGTGGGATCGGATGATTGTAAGATTAATGAGGGTTTGGTTGAGGAGAAAGAGGtgaagaattttgaaattgaagtaAAAGAGGGTGCGAAAAAGGAGGTGTTCACTTTGAATGCCAAGGTTAAAGAAGAGGAGGATCCGGCATTGTCTGCGACTGCTGGTTGGAAGGAAGCGATAAGTGGTGCCGGTGGGATCGATGTTGCTGATTCGAAGGATGCTTTGAAGAACCAACAACAGGCAGAGTTTGATTTGGAGGAAGATGGGTCACTGCCTTTCTATATATTAGATGCCTACGAGGAGTTTTATGGAGAAAATAGGGGCACCCTTTATCTCTTTGGGAAGGTCAAAGCAGGGGATTTGTATCAGAGTTGCTGTGTTATTGTGAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGCCGTCCTTTGCATCGCACCGAAGAGATGATGAGTCTAGAGAGAGATGTCCAAGAGTCTCGCATTTCTTCTGCAGATTTCTTTAAAAAGCTGCAAGATGCGGTATCTGatgttaagaatgagatagcaCAACATCTGGTGAATTTGGAAGTTTCCAACTTTAGCATGGCGCCTGTTAAGAGGAAATACGCATTTGAACAATCTGAAATTCCTGCAGGCAAAAATTATGTGGtgaaaatcaattattcatTCAAGGATCCAGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTTTGTGCTCTCTTAGGAAGTGGTTGCAGTGCGCTCGAGCTTTTTctgattaaaagaaagataaagggGCCTTCATGGCTAAAGATTTCAAAGTTTTCTACAAGCTCAGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGCTGACTCTCCTAAAAACATAAGGAGTTCAACACCTTCAAAAATCACTTCTAATATTCCTCCTGTGGTTGTTGCAGCGATAAACTTGAAAACCACCATAAATGAAAAACAGAACGCGAATGAGATTGTATCAGCATCCGTTATCTGTTGCAACATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAAGGCTGACCCATTTTACTGTTATTCGTAAACTTGATGGGAATATATTTCCAATGGGATTCAATAAGGAGGTTACGGACAAAAACTTAAAAGCTGGTTCAAATGTTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTGTTAAACCGCTTGATGTTAGAATTACACAAGTTGGATTGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTACACAGATCCCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGGAAGAAGAAGCAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCTTGCATTGCTGGCCGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACATCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCCAAAATGTTCCAAACAGCAGAATCCCTAAAGGAGCTTATTGAATACGGTGAAACGGATGCATGGTTGTCTATGGAACTCatgttttatttaagtattCTTCCACTCACACGTCAATTGACTAATATAAGTGGTAATCTGTGGGGAAAAACTCTTCAGGGTGGTCGAGCACAGAGAGTGGAGTATCTTTTGCTGCATACTTTCCATGCAATGAAATATATGGTGCCAGACAAGTTCTCAAACCatgcaaaagaaacaaaattgacaAAACGCAGATTAACTCATGTTGTTGAGGATAGCAACTTTGATGTAGATATTGATGATGCAAACTATGACAATGATGCTTCCGAAGCTGATCATAAGAAAAGCAAAAAGGGTCCTTCTTATGCCGGGGGGCTGGTTTTGGAGCCCAAGAAGGGTCTATATGACAAGTATATATTGCTTCTGGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACAGTTGAAAGATCTTTGGATGGATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTTGATCGGAGGAAAAAGGTAAAGTCGTggataaagaatgaaaaaaagaagaatgaaaaagctgaTCCTATTAGAGTTCAGCAACTGGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAACagTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTAGCTGAGCTCATAACTCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTcagaataatttgaatttagagGTGATCTATGGCGATActgattcaataatgatttaCAGTGGGCTAGATGATATTGAGGAAGCAAATAAAATTGCTGTAAGAGTTATTCAAGAGGTCAATAAGAAATATACATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTACTTAAGAAAAAGAAGTATGCAGCCGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTCGTGGAGTCAATCCACAACTCTCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTATCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCGCATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTACGAGCAGGGCGGTAGTTCAGGCAGTGCAGCCGGCATTGCACAGCGTGCCAGACATCCTGATGAACTTAAACGAGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGTACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCGTCAAAGTTTCATCATAAATCAAGTGAAGCTTTAAATGATGATTCTACAAGCACACTCCTGTTTGTTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGGCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTTTAAAtctatttgttgtttgttgggAAGTGAAAGGCCAACCAGCACAGCCCCAGAGGAATCTGACTACAATTTCTGGCGTAAGCTGTGCTGTCCTAAATGCCCAGAAGATGTTACAATTTCTCCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTGTTTTAATGTACTATAGAGGTTTACTAATGTGTGATGATGAAACGTGTAAGCATACAACACGGAGTATCAGCCATCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGtACACTGAAGCAGATTTGTACAGGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAGATGGAGGCAAAATCTAGAGTACCGATAGAGAAAGAGTTGATCAAAATTAGGCCGATGATTGATCTGGCAGCATCAACAGCACAGAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAGACTGCAGGATCTGGTCATTACAGTTTAA 4554 0.4291 MADAEPVSGRRRPRGPEATPRSEALERLKARLRGGRRSDGTGPQIRLENPIYDTVPEDEYNALVAERREQARSFIVDDEGLGYGDEGEEEDWSQAGFTLSSDESEGESERPKRKKVEKKDPQPKRHSSSLSAAAAMMGRQRLSSMFTSSVFKKSRDDKACDSIVDDVIAERAQKQTNPSSVSDDALHKPSVDLIGAASLPADDNIESIKVVVESNDLDSGLEQNCEVVSEIEERAPMVGSDDCKINEGLVEEKEVKNFEIEVKEGAKKEVFTLNAKVKEEEDPALSATAGWKEAISGAGGIDVADSKDALKNQQQAEFDLEEDGSLPFYILDAYEEFYGENRGTLYLFGKVKAGDLYQSCCVIVKNMQRCVYAIPSRPLHRTEEMMSLERDVQESRISSADFFKKLQDAVSDVKNEIAQHLVNLEVSNFSMAPVKRKYAFEQSEIPAGKNYVVKINYSFKDPVLPVDLKGESFCALLGSGCSALELFLIKRKIKGPSWLKISKFSTSSASRRVSWCKFEVTADSPKNIRSSTPSKITSNIPPVVVAAINLKTTINEKQNANEIVSASVICCNMVKIDTPMLASEWKRPGRLTHFTVIRKLDGNIFPMGFNKEVTDKNLKAGSNVLCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLGRRSSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLAKSHLNKFRKEVAPHEVPKMFQTAESLKELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGGRAQRVEYLLLHTFHAMKYMVPDKFSNHAKETKLTKRRLTHVVEDSNFDVDIDDANYDNDASEADHKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKKVKSWIKNEKKKNEKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEEANKIAVRVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVSLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAAGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEALNDDSTSTLLFVADDEERYRGCEPLGLSCPSCSGTFDCPPVFKSICCLLGSERPTSTAPEESDYNFWRKLCCPKCPEDVTISPAMIANQVKRQAERFVLMYYRGLLMCDDETCKHTTRSISHRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYRQLSYFCHVFDTVSCIEKMEAKSRVPIEKELIKIRPMIDLAASTAQKIRDRCAFGWVRLQDLVITV 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2502 1517 TIGRFAM pol2: DNA polymerase (pol2) 51 1268 - -
Ssu2g2502 1517 MobiDBLite consensus disorder prediction 1 52 - -
Ssu2g2502 1517 Gene3D - 328 527 - -
Ssu2g2502 1517 Gene3D - 1114 1301 IPR042087 -
Ssu2g2502 1517 SUPERFAMILY DNA/RNA polymerases 875 1286 IPR043502 -
Ssu2g2502 1517 CDD DNA_polB_alpha_exo 541 793 - -
Ssu2g2502 1517 Gene3D Helix hairpin bin 946 996 - -
Ssu2g2502 1517 CDD POLBc_alpha 876 1286 IPR045846 GO:0003887|GO:1902975
Ssu2g2502 1517 PRINTS DNA-directed DNA-polymerase family B signature 983 995 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu2g2502 1517 PRINTS DNA-directed DNA-polymerase family B signature 900 913 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu2g2502 1517 PRINTS DNA-directed DNA-polymerase family B signature 1036 1044 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu2g2502 1517 MobiDBLite consensus disorder prediction 1 36 - -
Ssu2g2502 1517 Pfam DNA Polymerase alpha zinc finger 1311 1513 IPR015088 GO:0003887|GO:0006260
Ssu2g2502 1517 PANTHER DNA POLYMERASE 313 1515 - -
Ssu2g2502 1517 Gene3D Palm domain of DNA polymerase 869 1099 IPR023211 -
Ssu2g2502 1517 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 313 1515 - -
Ssu2g2502 1517 SUPERFAMILY Ribonuclease H-like 322 830 IPR012337 -
Ssu2g2502 1517 Gene3D - 541 854 IPR036397 GO:0003676
Ssu2g2502 1517 Pfam DNA polymerase family B 801 1270 IPR006134 GO:0000166|GO:0003677
Ssu2g2502 1517 Coils Coil 1050 1070 - -
Ssu2g2502 1517 ProSitePatterns DNA polymerase family B signature. 1038 1046 IPR017964 GO:0000166|GO:0003676
Ssu2g2502 1517 MobiDBLite consensus disorder prediction 78 136 - -
Ssu2g2502 1517 Gene3D - 368 494 - -
Ssu2g2502 1517 SMART polmehr3 541 1050 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu2g2502 1517 MobiDBLite consensus disorder prediction 103 125 - -
Ssu2g2502 1517 Pfam DNA polymerase family B, exonuclease domain 358 735 IPR006133 -
Ssu2g2502 1517 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Ssu2g2502 1517 Gene3D DNA Polymerase alpha, zinc finger 1310 1502 IPR038256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2502 Ssu-Chr2 83836098 83848821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2502 2 1515 Core DNA Replication Machinery Family AT5G67100 60.996 0.0 1820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2502 K02320 - gmx:100798779 2622.81