Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2501 ATGCCCGATCAGTCCACCGCTGGCGCAATGAACGACCAGCTCTCCAACCCCACGTCCATCTTCGGCCTCCGGCTGTGGGTGGTCCTCGGCGTCGTGCTCGGCGCCGCCATCgtcctcctcctcttcctcatCTCCGTCTGGCTCGTCTTCAAGCGTTCCAAAACCAACCCCGTTTCCATCCCGGACGTCTCCAAGGAGATCCAAGAAATCAGGCTCGACCACGCGCCCAACCCCTCCACCCTCCAACCCGACCCCTTCCCCGAACCTGACCCCGTACTCCCCACCGCCGAGGAGGAAACCAACGCGCTCGGCTACCACAGAATCCAGTTCGAGATTGGCAAGAACCACCGAATCTCCTATCCCGAACGCGCCTTGGTTCGGTCTAGCTCCAATGACCCCACCGAATCTCGCCCCCTCGATCAGGTTCCCACCGTCATTCCAGAAGTTTCTCACTTGGGCTGGGGCCACTGGTACACCCTCCGCGAGCTCGAGGATTCCACCAACGGCTTTGCCCCTGACAATGTTATTGGCGAAGGTGGATACGGAATTGTTTATCACGGTATCTTGAACGACAACACTCATGTTGCCGTTAAGAATTTGCTCAATAATAGGGGGCAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCTATAGGACGAGTTCGTCACAAGAATTTGGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTTTATGAGTACGTTGACAATGGTAACTTGGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGGTTAACTTATCTTCACGAGGGGTTGGAACCAAAAGTTGTTCACCGGGATATTAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGAATGCAAAGGTGTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGATATGTTGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAACGGAGTGATGTTTATAGTTTTGGAATTCTTATTATGGAAGTGATTACAGGAAGGAATCCAGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTAGTTGACTGGCTCAAGAAGATGGTTAGTAACAGAAATCCAGAGGGGGTACTGGATCCCAAGCTTCCTGAGAAACCAACTTCAAGGGCACTAAAACGAGTCCTTCTTGTAGCCTTACGCTGCACAGATCCTAATGCACAAAAGCGCCCTAAAATGGGCCATGTAATACACATGCTTGAAGCTGAAGATTCGCCTTACAAAGAGGATCGCAGAGCTAGAAGGGATGCGGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGCGACTGTATCAGTTGATGATCGTAAGCTTGAAAACGGCATGTGTGCCAATGAGACACAATCGAACCTTCAAATAGAAAAGCAATAA 1455 0.4942 MPDQSTAGAMNDQLSNPTSIFGLRLWVVLGVVLGAAIVLLLFLISVWLVFKRSKTNPVSIPDVSKEIQEIRLDHAPNPSTLQPDPFPEPDPVLPTAEEETNALGYHRIQFEIGKNHRISYPERALVRSSSNDPTESRPLDQVPTVIPEVSHLGWGHWYTLRELEDSTNGFAPDNVIGEGGYGIVYHGILNDNTHVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCRLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRVLLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGHSPNDRVGDGLKEEATVSVDDRKLENGMCANETQSNLQIEKQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2501 484 ProSiteProfiles Protein kinase domain profile. 170 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2501 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Ssu2g2501 484 Pfam Protein kinase domain 173 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2501 484 PANTHER OS01G0323000 PROTEIN 5 474 - -
Ssu2g2501 484 PANTHER RECEPTOR-LIKE KINASE PLANT 5 474 - -
Ssu2g2501 484 Gene3D Phosphorylase Kinase; domain 1 149 245 - -
Ssu2g2501 484 CDD STKc_IRAK 176 425 - -
Ssu2g2501 484 SUPERFAMILY Protein kinase-like (PK-like) 146 425 IPR011009 -
Ssu2g2501 484 SMART serkin_6 170 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2501 484 Gene3D Transferase(Phosphotransferase) domain 1 246 441 - -
Ssu2g2501 484 MobiDBLite consensus disorder prediction 424 469 - -
Ssu2g2501 484 MobiDBLite consensus disorder prediction 470 484 - -
Ssu2g2501 484 MobiDBLite consensus disorder prediction 424 484 - -
Ssu2g2501 484 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2501 Ssu-Chr2 83820167 83822753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2501 16 420 Trihelix Transcription Factor Family AT1G68690 38.353 6.96e-81 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu2g2501 Pkinase 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2501 - - gmx:100797726 841.262