Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2497 ATGGACGTGGACATACTGAAAACTTCTATTAGTGACAGCAGCATGGACATGATGATGCAAATGGAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACAACAACACTCTTCTCTACCCGGAAAACGAGTTCTTAAGCTCCACCACCACTCTACCCGTGTTCTCCAACGTTAACAACCCAAACGTTAGAACTCCACCCACTTTGATTAATCCTCCACCACCTTCCTCTAACCTCGTTCTCCAACAACCCATGACACCTCCTCTTCAACCACCCAACCCTTCATTTTCGGAGAAGAAGAATTCCGTGGCGGCCATGAGGGAGATGATTTTCCGTGTGGCGGTTATGCAACCTGTTCATATAGACCCGGAATCTATCAAGCCACCGAAGAGACGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCGGCGAGGCACAGAAGAGAGAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTTCCCGGCGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATACACTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAGTCAGGAGCAAGTAGACCCTTGAACGTTGTTGGCTTCCCTACTGTGTCCAACGCCAATAATGTTAACTATTCTGCTTTTCTCAAGAGTTGCCAACCTTGTCAAATGATGGGTTCCGTTTCTAAACAAATGCTCAGTTAA 717 0.463 MDVDILKTSISDSSMDMMMQMEKFPELCEPFYNNNTLLYPENEFLSSTTTLPVFSNVNNPNVRTPPTLINPPPPSSNLVLQQPMTPPLQPPNPSFSEKKNSVAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQSGASRPLNVVGFPTVSNANNVNYSAFLKSCQPCQMMGSVSKQMLS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2497 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 194 IPR036638 GO:0046983
Ssu2g2497 238 SMART finulus 141 190 IPR011598 GO:0046983
Ssu2g2497 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Ssu2g2497 238 CDD bHLH_AtIND_like 136 192 - -
Ssu2g2497 238 Pfam Helix-loop-helix DNA-binding domain 145 184 IPR011598 GO:0046983
Ssu2g2497 238 Gene3D - 134 201 IPR036638 GO:0046983
Ssu2g2497 238 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 234 IPR045843 GO:0003700|GO:0006355
Ssu2g2497 238 PANTHER TRANSCRIPTION FACTOR HEC2 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2497 Ssu-Chr2 83753814 83754530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2497 21 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 57.065 2.54e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g2497 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2497 - - gmx:100796649 327.791