Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2495 ATGGCATCGAAACCCAACGGCAAATGCGGTTGCAACAAGGGTTTTGCTGACAGTTATATGTTGTTGAACCATGAAGACGCTCATTTCTTTGATCTCCTTCACGTCCTATTATCCCGTAACTTGGGAAATCGAAAATTTGTGGACTGCCACGCTGGGGGAGCTGTTGAGGAAAGCTTCCGCCATAGATGGCTTATATTTGTCTCTGTCGTACTCCAGAAGCTTCTCGTGCTCATCGCTAAGCCACTTGCCTTCTTCGGCAATTGCGTTGAGCTCTTGGTCAACCTCCTTGTCCTCAACGGTGGCTTCTTCAGGATCGTCATTAACTTCCTCACAGGTCACCTGGTCGTCCCCGAACGTGATGGACCAAATTATTTGTCTTGTATTGGAAATTTGGACGTGCGAGTAAAGTTGGATGCTATCGGGCGTGACGACAGCAGGTACTATGCTTCATTAGCTATGATGGCTTCAAAAGCATCCTATGAGAATGCGGCTTACCTTAAAGctctaatcaaaaatcactggaagATGGAATTCGTGGGATTTTACGACTGCTGGAatgATTTTCAAGGAAAGGCCACAACCCAAGTCTTGATTGTTTTGGACAAGCATGAGGAACGCGATACTTATGTCGTGGCTTTCCGAGGAACGGAACCCTTTGATTCAGATGCATGGTGCACTGACCTTGACATCTCGTGGTATGGGCTTCCCGGCATTGGAAAAATGCATGGTGGCTTTATGAAAGCCTTAGGGCTACAAAAAAATGTGGGGTGGCCTAAGGAGATTCGATGGGATGAAAACATTCCCCCGTTAGCCTACTATGTTATTAGGGACATTCTAAGGAAAGGTTTGAGTGAAAATCCTAATGCAAAGTTTATACTGACGGGTCATAGTTTGGGTGGAGCACTCGCAATCCTCTACCCTACGATCATGTTCTTGCATGATGAGAAGTTGCTGATGGAGAGGTTGGAAGGGATCTACACCTTTGGGCAACCAAGGGTTGGAGATGAAGCATATGCACAGTACATGAGACAAAAATTGAGGCAAAATTCTATCAGGTATTGCAGGTTTGTTTATTGCAATGATATAGTTCCGAGGTTGCCCTACGACGATAAAGACTTACTGTTCAAGCACTTCGGGGTTTGCCTTTTCTTTAACAGGAGCTATGAACTCAGGGTTCTGGACGAAGAGCCGAATAAGAACTATTTCTCGCCATGGTGCGTGATACCCATGATGTTCAATGCTGCTTTGGAACTAATAAGGAGCTTTACCATTGGGTACATAAATGGACCTCACTATAGAGAAGGATGGTTTCTCTTTGTTTTCAGGTTGTTTGGTTTACTAATTCCCGGCATACCTGCTCACGGTCCCCAAGATTATATAAATTCAACACTTCTGGGATcaattgaaaaacattttaaagcaGATTGA 1428 0.4349 MASKPNGKCGCNKGFADSYMLLNHEDAHFFDLLHVLLSRNLGNRKFVDCHAGGAVEESFRHRWLIFVSVVLQKLLVLIAKPLAFFGNCVELLVNLLVLNGGFFRIVINFLTGHLVVPERDGPNYLSCIGNLDVRVKLDAIGRDDSRYYASLAMMASKASYENAAYLKALIKNHWKMEFVGFYDCWNDFQGKATTQVLIVLDKHEERDTYVVAFRGTEPFDSDAWCTDLDISWYGLPGIGKMHGGFMKALGLQKNVGWPKEIRWDENIPPLAYYVIRDILRKGLSENPNAKFILTGHSLGGALAILYPTIMFLHDEKLLMERLEGIYTFGQPRVGDEAYAQYMRQKLRQNSIRYCRFVYCNDIVPRLPYDDKDLLFKHFGVCLFFNRSYELRVLDEEPNKNYFSPWCVIPMMFNAALELIRSFTIGYINGPHYREGWFLFVFRLFGLLIPGIPAHGPQDYINSTLLGSIEKHFKAD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2495 475 SUPERFAMILY alpha/beta-Hydrolases 145 388 IPR029058 -
Ssu2g2495 475 CDD Lipase_3 146 385 - -
Ssu2g2495 475 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 10 475 IPR044819 GO:0004806|GO:0006629
Ssu2g2495 475 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 10 475 - -
Ssu2g2495 475 Pfam Lipase (class 3) 210 370 IPR002921 GO:0006629
Ssu2g2495 475 Gene3D alpha/beta hydrolase 141 408 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2495 Ssu-Chr2 83685301 83702615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2495 18 467 Acyl Lipid Metabolism Gene Families AT1G56630 48.718 7.38e-160 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g2495 Lipase_3 4.7e-37 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2495 - - gmx:100795779 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2495 2 83685301 83702615 Ssu6g1878 6 32737084 32741225 PCT