Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2493 ATGGTGGTTTTCTTCCTCCTAAACTCTGTGTGGAGTTCTTCAGTCGGTTCAAAGCTAAATCCGGTCCATGCGTCCGGCCAAGCCCAATTCAAAGATGCGAAATTGCGAACTGGGCATGTTAATTATGGCCCGGTAAATGTGAAAGACAGTGCAAAGGCGAGACGGTGCGGAGCAGCTCGAgcgagagagaggaagagagataGGGAGAGCGAGCGAGCGAGCGAGATCTTCGATTTAGGGTTTTCAATTTCGTATTCACCAAGATTTTTCCCTCTGCAGCGTTCCATTCTCTTTCATTGCACTTTGTTGAAGTTTCTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTCGATACTGAGGGATTAAGGGAGTATATGAGCAAGTTTGGTGAGCTGGAAGATTGCATTGTCATGAAGgaGCGATCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTTGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGCAATAGGACGCTGGAAGTCAAGGTGGCCACACCAAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTGGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTTCGAAGTCATTTTGAGAAATATGGTGAGATAACAGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAGTTTGATGTCAGAAACCCATGAACTGGGAGGTTCTACGGTGGTGGTTGATCGAGCTACACCTAAGGATGATGACTTTAAGCCAATTGGCAGAATGCCACAGGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGACGGGGAGAGCCTGCTCGgagaattagtaaaaaaatttttgTTGGCCGTCTTCCCCCAGAGGCAACTGCTGAGGACCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCGAGgGATCCTAAGAGAACAGGTCACAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTGGCAATAGATTCTGCTACGCCTGTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAATAGTATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGAACTTATGGGAGGATGTATGGTAGCTTAGACTTTGAAGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAA 1392 0.4382 MVVFFLLNSVWSSSVGSKLNPVHASGQAQFKDAKLRTGHVNYGPVNVKDSAKARRCGAARARERKRDRESERASEIFDLGFSISYSPRFFPLQRSILFHCTLLKFLMEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVESLMSETHELGGSTVVVDRATPKDDDFKPIGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGEPARRISKKIFVGRLPPEATAEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRTYGRMYGSLDFEDWGYGIGRPSRADWRYRPY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2493 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 274 IPR000504 GO:0003723
Ssu2g2493 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 186 IPR000504 GO:0003723
Ssu2g2493 463 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
Ssu2g2493 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 258 IPR000504 GO:0003723
Ssu2g2493 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 386 IPR000504 GO:0003723
Ssu2g2493 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 179 IPR000504 GO:0003723
Ssu2g2493 463 SMART rrm1_1 111 182 IPR000504 GO:0003723
Ssu2g2493 463 SMART rrm1_1 331 402 IPR000504 GO:0003723
Ssu2g2493 463 SMART rrm1_1 199 270 IPR000504 GO:0003723
Ssu2g2493 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 406 IPR000504 GO:0003723
Ssu2g2493 463 Gene3D - 194 280 IPR012677 -
Ssu2g2493 463 Gene3D - 106 193 IPR012677 -
Ssu2g2493 463 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 109 463 - -
Ssu2g2493 463 SUPERFAMILY RNA-binding domain, RBD 329 429 IPR035979 GO:0003676
Ssu2g2493 463 PANTHER OS01G0945800 PROTEIN 109 463 - -
Ssu2g2493 463 Gene3D - 326 410 IPR012677 -
Ssu2g2493 463 SUPERFAMILY RNA-binding domain, RBD 194 293 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2493 Ssu-Chr2 83661231 83667370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2493 114 379 Eukaryotic Initiation Factors Gene Family AT2G36660 24.265 2.37e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2493 K14411 - gmx:100795240 711.064