Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2484 ATGTCGCAACGGTCGGTGCCGGCACCGTTCTTGACGAAGACGTACCAGTTGGTGGACGATCCGGGCACGGACGAGGTGATATCGTGGAGTGAGAGTGGCAACACTTTTGTGGTGTGGAAACACGCGGATTTTGCAAAGGATTTGCTTCCTAACTATTTTAAGCACAATAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGATTCCGAAAGATCGTGCCAGACAAATGGGAATTCGCGAACGAATATTTCAAGCGAGGGCAGAAGGAGCTTCTCTCCGAGATCAAACGCCGCAAGACCGTGCCCCAATCGTCGGCGCAACCACCGGAGGTTGGAAAATCCGGCGCCGACGGTAACTCTCCGTCGAACTCCGGCGGCGACGAGGCGGGCTCCACCTCAACCTCCTCCTCGTCCTCGTCCTCCGGTTCGAAGAACCCGGGATCGGAGGACACAAACACAACAACTTCTCATCAGTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGGGAGCTCGCTCTTGCGAGGAAGCAGTGTGATGAGCTGGTGGCTTTCCTCAGGGACCGTCTGATGGTGGGTCCCGATCAGATCGATCGCATCATGCGGCAAGGAAGCATTGGATCGGACAACGCGGTAGGTGAAGGCGGAGGAGACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAGACGATGCACTAACAGACAAAAGAAACAACCACAAGAGAGGCCGCGATGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCCAAGCCTGTTGTTGACTTTGGAGCTGTAAATGTCATGATGAAGGGCAACAAGGTTTGCAACTGA 852 0.534 MSQRSVPAPFLTKTYQLVDDPGTDEVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLSEIKRRKTVPQSSAQPPEVGKSGADGNSPSNSGGDEAGSTSTSSSSSSSGSKNPGSEDTNTTTSHQLSSENEKLKKDNETLSWELALARKQCDELVAFLRDRLMVGPDQIDRIMRQGSIGSDNAVGEGGGDCLKLFGVWLKDDALTDKRNNHKRGRDDQMGFGGPRLKESKPVVDFGAVNVMMKGNKVCN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2484 283 MobiDBLite consensus disorder prediction 99 161 - -
Ssu2g2484 283 Gene3D - 2 101 IPR036388 -
Ssu2g2484 283 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2484 283 Coils Coil 164 184 - -
Ssu2g2484 283 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2484 283 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2484 283 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Ssu2g2484 283 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 283 IPR027725 -
Ssu2g2484 283 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 283 - -
Ssu2g2484 283 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2484 283 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2484 283 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2484 283 MobiDBLite consensus disorder prediction 96 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2484 Ssu-Chr2 83534547 83535663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2484 2 283 HSF AT4G36990 53.356 1.58e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu2g2484 HSF_DNA-bind 3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2484 K09419 - gmx:100791543 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2484 2 83534547 83535663 Ssu6g1882 6 32834483 32837713 PCT