Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2480 ATGTCTGCTCAGGTCGGTGTCAGGACACGAGCCCGAGCCGCATTAGCAGCCATGGAAGCTGCCACTTCAGCTGAGCCATCACACAAGAGAAAGAACGTCAGCAACAGCGAGGAAGAGTCAAAATCCTCCAAGACTCCGAGAACCAGTTCCGCCGCCGCCAAACCGGCGACGGAGGCGGAGAATGTTCCGCCGGTGCCGGAGACCAAGAAACGCTGCCTGAGCCCTACCTCCAGTGACTTTCCGGCTTCTTGCTGTTCCAGCAACGGATCCACTGGCCTCCATGACGAGGAGATCAAGCTGTTAGATCTGGAGGTGGAGAGCGCGCAAGTTGAAACGTCGACGTGCAATGGCGGTGAAGAAATTGAGAGGAGAAAGATGGACCATTCTGGCGAGCTTCGAGAAAATTCGCAGGAGCTGGTGTCGATGGCGATCAATTCTCGCCGTCCCTCTTCAACGGCGCAAACCATGCCTACCGAGTTGGAGCTCGAGGAATTCTTTGCTACCGCCGAGAAAGACATTCAGAAACAATTTCAAGACAAGTACAATTATGATGTTGTTAAGGACGTGCCATTGGAAGGACGCTACGACTGGGTTCAGCTGAAGCCATGA 609 0.5419 MSAQVGVRTRARAALAAMEAATSAEPSHKRKNVSNSEEESKSSKTPRTSSAAAKPATEAENVPPVPETKKRCLSPTSSDFPASCCSSNGSTGLHDEEIKLLDLEVESAQVETSTCNGGEEIERRKMDHSGELRENSQELVSMAINSRRPSSTAQTMPTELELEEFFATAEKDIQKQFQDKYNYDVVKDVPLEGRYDWVQLKP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2480 202 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 3 202 IPR044275 GO:0004861|GO:0045736|GO:0051726
Ssu2g2480 202 MobiDBLite consensus disorder prediction 71 91 - -
Ssu2g2480 202 PIRSF CKI_KRP_plant 1 202 IPR044275 GO:0004861|GO:0045736|GO:0051726
Ssu2g2480 202 Gene3D p27 150 202 IPR044898 -
Ssu2g2480 202 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 7 3 202 - -
Ssu2g2480 202 MobiDBLite consensus disorder prediction 1 91 - -
Ssu2g2480 202 MobiDBLite consensus disorder prediction 117 134 - -
Ssu2g2480 202 Pfam Cyclin-dependent kinase inhibitor 156 200 IPR003175 GO:0004861|GO:0005634|GO:0051726
Ssu2g2480 202 MobiDBLite consensus disorder prediction 24 44 - -
Ssu2g2480 202 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2480 Ssu-Chr2 83485303 83486533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2480 155 202 Core Cell Cycle Gene Families AT5G48820 58.333 7.64e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2480 - - gmx:547743 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2480 2 83485303 83486533 Ssu6g1890 6 32996826 32997913 PCT