Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2465 ATGGGTCTCTGCACTTCGAAACCCGCTCTTTCGTCTCCCCAGTCGGCTACTCGCTCCCCCGCGCCGCCTCAAAACGACGCCGTCGCACTCACTCACAGCGCCGCGAACTCGGCCAATGGCGAAAACGAAAACCCTAAGGAGACCAAGGAGCCAGAGAACAACGGTAGGAGATCTCCGTTTTTCCCGTTCTACAGTCCGAGTCCGGGGCGCTACGTGTTTCCGCTCTCGCCGCGGCGGTTTTTCAAGCGGCCGTTTCCGCCGCCGTCGCCGGCGAAGCACATACGAGCGGCGCTGGCTCGGCGGCACGGCTCGGTGAAGCCCAGCGGGGGTTCCATTCCGGAGGCGGAGGTGGTCGCCGGGCTCGACAAGAACTTCGGATTCTCCAAGCATTTCGGGAATAAATACGAACTCGGAGATGAGGTCGGGAGAGGGCATTTTGGGTACACTTGTGTTGCGAAGGTGAAGAAAGGAGAGCTGAAAGGGCAACAGGTGGCCGTTAAAGTCATTCCGAAAGCGAAGATGACCACTGCAATTGCTATTGAGGATGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTGACTGGACACAAAAATCTAGTACAATTCTATGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGCTGTTGGACAAAATATTATcaagAGGTGGGAAGTACACAGAGGAAGATGCAAAAGCTGTTCTGAGACAAATACTGAATGTCGTTGCTTTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGACGAGAACTCAAAGCTGAAGGCCATAGACTTTGGGTTGTCAGATTTTGTTAAGCCAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTACGTGGCTCCTGAAGTTTTACATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTATTGGAGTGattgcatatattttattatgtggcAGCCGTCCCTTCTGGGCCCGGACCGAGTCTGGTATCTTTCGTGCTGTATTGAAAGCTGATCCATGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAAGGAATTTTGTTAAGCGACTACTAAATAAAGATCCACGGAAAAGAATGTCTGCAGCACAGGCATTAAGTCATCCATGGATTAAAAACAAGGATGTAAAAGTACCTCTGGATATTCTAACATTCAAGCTCATAAGGGCATACATGTGTTCCTCATCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAGACGTTAACTGTTGATGAGCTATTTTATTTGAGGGAGCAGTTTGCACTTTTAGAGCCAAGCAAAAATGGCACCATTAGCTTGGAAAATATCAAAGCGGTCTTGATGGTAAATGCAACAGATGCTATGAAGGAGTCACGCATACCTGACTTTCTGGCATCACTTAATGCACTACAATATAGAAGGATGGATTTTGATGAGTTTTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGACCAGTGGGAGCAACATGCACGTTGTGCCTATGACCTTTTTGAAAAGGATGGAAACAAGGCCATAGTCATTGACGAACTAGCTTCGGAGCTTGGGCTTGGTCCATCGGTCCCCGTTCATGCTGTTCTTCATGATTGGATTCGGCACACTGATGGAAAATTAAGTTTCCTTGGATTTGTCAAACTGTTGCATGGCCCATCTAGAAGTCTTGCAAAAGCTCAATAG 1764 0.4666 MGLCTSKPALSSPQSATRSPAPPQNDAVALTHSAANSANGENENPKETKEPENNGRRSPFFPFYSPSPGRYVFPLSPRRFFKRPFPPPSPAKHIRAALARRHGSVKPSGGSIPEAEVVAGLDKNFGFSKHFGNKYELGDEVGRGHFGYTCVAKVKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDHDNVYIVMELCEGGELLDKILSRGGKYTEEDAKAVLRQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSKLKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPCFDEPPWPSLSDEARNFVKRLLNKDPRKRMSAAQALSHPWIKNKDVKVPLDILTFKLIRAYMCSSSLRKAALRALSKTLTVDELFYLREQFALLEPSKNGTISLENIKAVLMVNATDAMKESRIPDFLASLNALQYRRMDFDEFCAAALSVHQLEALDQWEQHARCAYDLFEKDGNKAIVIDELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKAQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2465 587 MobiDBLite consensus disorder prediction 1 62 - -
Ssu2g2465 587 SUPERFAMILY Protein kinase-like (PK-like) 132 421 IPR011009 -
Ssu2g2465 587 Pfam Protein kinase domain 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2465 587 Gene3D Phosphorylase Kinase; domain 1 128 224 - -
Ssu2g2465 587 SUPERFAMILY EF-hand 424 578 IPR011992 -
Ssu2g2465 587 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 42 582 - -
Ssu2g2465 587 SMART serkin_6 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2465 587 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Ssu2g2465 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Ssu2g2465 587 MobiDBLite consensus disorder prediction 7 42 - -
Ssu2g2465 587 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2465 587 Gene3D Transferase(Phosphotransferase) domain 1 225 415 - -
Ssu2g2465 587 CDD STKc_CAMK 134 396 - -
Ssu2g2465 587 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 582 - -
Ssu2g2465 587 Gene3D - 416 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2465 Ssu-Chr2 83174147 83178812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2465 1 587 EF-hand Containing Proteins AT3G50530 73.865 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu2g2465 Pkinase 3.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2465 K00924 - gmx:100815721 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2465 2 83174147 83178812 Ssu5g1549 5 48434873 48440296 PCT
Ssu6g1904 6 33397892 33401770 Ssu2g2465 2 83174147 83178812 PCT