Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2462 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTGTCTGAGGCGAAAGTGCACGCAAGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTGAACGAGCTCAGCGCCGCGCAGCGAGACGACGCCGTTAAGTCCCTGGCCTACGAGGCCGAGGCGCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTCAGGCAGATCCAGGTGGAGCTCAACAATGCAAAGAAGGAACTCGCGACCTATATAGGCCCCCAGGCTCTTCAACCCGCCCCCATTATCCAACACCACCCCAACAACCCTTTCCCCTCTAACCTCTATGGCAACATGCCGGCTGCCACGCCTGCCGTTCACGGTGGCCCGTTGGTGATTCGGGAGGCCCAGCCGCCGCCGCCGCATTCGCTCTTGGAAGCTCAGCAGTTGGCCGCGGCTGCGGCCGCCAGGGAACAGCAGGAGATGTTTAGGAGCTACGAGCATCAGCAGCAGCAGGAGTTCCTCCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCACAACCTGGTGCTTCCGCTGATCAGTTGTCTCCTTCGTTGGCTCTGGGATCCTTCGATAATGCTTACCACATGCAGCAACCGCAGCAGGGAGAACCTCATGCTCATCCTCACCACCTTCCTCTTGAGGCTCAGCTACTGCTCCCTCCGCAGCAGAAGCAACCGCAGCAACAAACCCAGCACCACCAGCAGTCGCAATTGCCGCTTCACCAGCAACACTCTGAGAGCGAGGAGTGTAGGAGTGTTGGTCCATCTTGTTGA 906 0.5982 MSSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQALQPAPIIQHHPNNPFPSNLYGNMPAATPAVHGGPLVIREAQPPPPHSLLEAQQLAAAAAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSQPGASADQLSPSLALGSFDNAYHMQQPQQGEPHAHPHHLPLEAQLLLPPQQKQPQQQTQHHQQSQLPLHQQHSESEECRSVGPSC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2462 301 Coils Coil 87 107 - -
Ssu2g2462 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 267 - -
Ssu2g2462 301 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Ssu2g2462 301 MobiDBLite consensus disorder prediction 262 301 - -
Ssu2g2462 301 MobiDBLite consensus disorder prediction 264 287 - -
Ssu2g2462 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 267 - -
Ssu2g2462 301 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2462 Ssu-Chr2 83089428 83090333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2462 5 288 AS2 family AT2G23660 45.033 7.24e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g2462 LOB 4.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2462 - - gmx:102664012 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2462 2 83089428 83090333 Ssu6g1913 6 33503793 33504632 PCT
Ssu6g1914 6 33549450 33550037 Ssu2g2462 2 83089428 83090333 PCT