Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2459 atgaatctCTATCTTCTTCCTCTTTATGCGTTCGTTACCACCTCAATTCAGGGTATGGTAGTGTGTGACTTAGTGGCGGTGAGAGAAAAACACCCACACCAAAACATTAACAACACTATGGAGCTGAGCTTGGATTTGAGTTTGGGCTTTGTCCCCAAAACCATTTCCCTGTTTTTCGGCGACGTTTCTGGAAACAGAGATAAGCGCGAGAAAGTGGCCACGCTCGAGGGCTACGTGCAAAGACTGGAAGACGAATTGAGGAAGGTGGATGCCTTCAAACGCGAGCTTCCTCTTTGCATGCTCCTCCTAAACGATGCTATAGCGAGATTGAAGGAGGAAAAGATTAAGTGCTCGGGAACGCAAGATTCGCCTTTGAGTGAAGAGTTTGTGCCGCTGAAAATCAATTCCGGAGGAAATGAAAACGAAAGCTGTGAGAATAAGAAGAATTGGATGAGCTCAGCTCAGCTTTGGAGCACTGAAAAAACCAAATCGAGGACTGAAGAGGATGATACGTCTGTGCCCGAGAACCCAATTAATGGAAATTCGTGTGTGCCGAAGAAGGAGGGTTCACGAGTTCCGAGTTTTGCTTTGATGACTCCTGCGTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTTGTGGAGATTGTAGTTCTGGCTCGTCTTTGCTCCGTGTTGAGGTACAGAGTCAGCCACAACCGCCGCAACATATGCAGCAGAACACGAGAAAACAAAGGCGGTGCTGGTCGCCGGAGCTTCACCGGCGTTTTGTGGACGCGCTTCAACAACTCGGTGGAGCACAAGtGGCTACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAGGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGGAGGTTCCCAGTTTCTTCAGTTGGTCAGGCTAATGACGGCTCATAG 945 0.4751 MNLYLLPLYAFVTTSIQGMVVCDLVAVREKHPHQNINNTMELSLDLSLGFVPKTISLFFGDVSGNRDKREKVATLEGYVQRLEDELRKVDAFKRELPLCMLLLNDAIARLKEEKIKCSGTQDSPLSEEFVPLKINSGGNENESCENKKNWMSSAQLWSTEKTKSRTEEDDTSVPENPINGNSCVPKKEGSRVPSFALMTPASELSHSNSKSVCGDCSSGSSLLRVEVQSQPQPPQHMQQNTRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVSSVGQANDGS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2459 314 MobiDBLite consensus disorder prediction 156 189 - -
Ssu2g2459 314 Pfam Myb-like DNA-binding domain 245 296 IPR001005 -
Ssu2g2459 314 Coils Coil 65 95 - -
Ssu2g2459 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 37 306 IPR044787 GO:0003700|GO:0006355
Ssu2g2459 314 Gene3D - 242 299 - -
Ssu2g2459 314 SUPERFAMILY Homeodomain-like 241 301 IPR009057 -
Ssu2g2459 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 243 298 IPR006447 GO:0003677
Ssu2g2459 314 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 37 306 - -
Ssu2g2459 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 300 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2459 Ssu-Chr2 83051767 83053438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2459 40 301 G2-like Transcription Factor Family AT2G03500 40.878 1.47e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g2459 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2459 - - pvu:PHAVU_002G021400g 471.855