Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2457 ATGGATCGGCCGGCGACCGGAGCAGCCGTGGACATGCCGATCATGCACGATAGCGACCGCTACGATTTCGTACGCGATATTGGCTCAGGGAATTTCGGCGTCGCCAGGCTTATGAGGGATAAGCACACGCAAGAGCTTGTTGCTGTCAAGTATATAGAACGCGGAGATAAGATCGATGAAAATGTCAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTATTTGAGCGGATTGGCAATGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTTTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGTCATGCAATGGAAGTGTGTCATCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCGGCACTCCATTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCGGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCTGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACTTTGTTCAAATTTCTCCCGAGTGTTGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAgAGAATCACTATTCCtgaaatattgaaaaatgaatGGTTTCTGAAGAATCTTCCACCTCACTTGATGGATGAAAAGATCATGGGTAACCAATTTGACGAGTCAGATCAGCCCATGCAGAGCATTGATGCGATCATGCAGATAATTTCAGAAGCTACCATACCAGCTGCGGGGACCTATTCTTTAGACCAGTTTATGGCTGATAACATAGTAGATGATGACATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATgccatataa 1080 0.4287 MDRPATGAAVDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKHTQELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERIGNAGRFTEDEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNDPKDFRKTIQRVLSVQYSIPDFVQISPECCHLISRIFVFDPAERITIPEILKNEWFLKNLPPHLMDEKIMGNQFDESDQPMQSIDAIMQIISEATIPAAGTYSLDQFMADNIVDDDMDELDSDFELDVDSSGEIVYAI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2457 359 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Ssu2g2457 359 SUPERFAMILY Protein kinase-like (PK-like) 13 313 IPR011009 -
Ssu2g2457 359 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 13 353 - -
Ssu2g2457 359 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2457 359 PANTHER SERINE/THREONINE KINASE 13 353 - -
Ssu2g2457 359 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2457 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Ssu2g2457 359 Gene3D Transferase(Phosphotransferase) domain 1 97 283 - -
Ssu2g2457 359 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Ssu2g2457 359 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2457 Ssu-Chr2 82945747 82959500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2457 20 281 CBL-interacting serine-threonine protein kinases AT5G25110 44.161 1.73e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu2g2457 Pkinase 4.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2457 K14498 - gmx:100783967 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2457 2 82945747 82959500 Ssu5g1560 5 48660636 48663470 PCT
Ssu6g1915 6 33618128 33622560 Ssu2g2457 2 82945747 82959500 PCT