Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2424 ATGGAAGTGCTTCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCAGAGTTCAGGAACAGCTTTTGTATACCAGAAAGAACCTAATTGCCCTGAAAATGGTGAACAAGTCAAATTGGCAGCTGCTCAACTGAATGAATCATCACATAAGATGCAAGGGCCTCATATAGAAAGGCAAGGTGATTTGTCAACTAATTCAGATTACCAATGCATTGGAGCTTCATGTTGTGACTGTCAAGTGGATGACCAAAATGAATATTGTGGTTTCCATGATTTTGAAGAAGACATGATAAATGAACCTTGCTTGGCATCCGAGAACTCTATCTCTGTTGTGGATACAATTGAAAGTGAATCACCAAACAACAGTAGGGAAGGAGACTTGTCATGTTCCGAACCCAAGTGGCTAGAGGGGGATGGATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCAAAACCAACTCATGACCGaaagaaatattttgttatattttttccaCACACAAGGATTTATTCTTGGGCAGACATGCTGCTTGTTAGATCAATTAATGAGTTTCCCCATCCTATTGCATATAAGACTCATCAGGTGGGATTGAAAATGGTAAAAGACTTAAGTGTTGCGCGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGCTGAACATGGTCGATcagtttcattttaatGCTTTGACAGAAACTGCACGTGATGTGAAGGTCTGGAAGGAATTTGCCATGGAGGCTTCTCATTGTAATGGTTATACTGATTTTGGAAGAATGCTTCTAAAACTACATAATAGCATACTGCAGCACCATATAAATGCTGACTGGTTCGGGCATTCTTATCCCTCTTGGGTTGACAGATGTCAGAGTGCAAATAGCGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGTGTCAATACTCTATGGGATGAACCAGTGCAACCAACATTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCGACACCACCTTCCTTATTGAGCTGCAAAGACACCCAACAACAGAGTTCTGATGATTTGTACCAAGCAAACCTTCAGGTTTGTAGAAAACGACCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAACCAAGGCCCAAACTATTGCTCTTGAGACTGACCCTGGCTTCTTTAAGAATCAGGATACATTGAGCACATTGGCAGCTGAGTCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGGCAACTGATTCACCTAGTAATTTGGCCAATAAATGGAATGAAATTGTAGTTGAGGCTGCcgattctcatttctcacatcCCAAAGAAATGGAATCAACACCTACAAATGACATGACTGTTGCAAAATCTGTAGAACCTGGTAGTAAGAATCGACAATGCATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTACATTTATCCTCCCGATTTTTGGGCAGCTCAGCAAAATCTGAAAAGCCTGTTCCAGTTGATACTCCGATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTAGCTCTTTATTCTGTAAGAAACACCGGCCACATGCTGAAACAGAACAGATCTCAAATTTACCCCAGAATGCATTAAAGAGGAAACATGAAGAAAATTATACTTGTTCAGAGGACATGTTCTGCAAAGACTTGGCATTGGTAAATGTTGAAAGTCCACTGCTAGTGGATCCAGTGTCATCCATTGGTGGTGATTCCTTACATGGAGAAAGCAACTTTAATGAGAAGCCCATGCATTCTGAAAATGATCATAATGCAATGGATTCACTGCACTGTATAGGTTCTCCTCCCTATGATAATAAGAATCCTTGTAGGGAAGGTCCTAAACGGTATTGCTTGTACTGTGAAAGACACCTTCCAAGCTGGCTGAAGCGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTATTCAAAAGCATTTTATCATTAAGAAACCCTGTTCCTAAGGATGTCCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAGGATTCTAGTGTAGGAGAGTATTTTACAAAGTTAGTTCATAGTGAAAAAGCAAGAATCAAGTCAATATGGGGATTCAATGATGACATGGATATATCCTCTGTCATGGAAGAACCACCTCTCTTGCCATCCACAATTAATGCTAACTATGATAAGGAAAATGCCATCAAGTGTAAGATATGCTCTGCAGAATTTCCTGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGAGGCTATGCATGTGCCATTTGTCTGGATTCATTTACTAACAAGAAACTGTTGGAGACCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGAAATACTGAGCAATTATGGCAACATGTTTTATCAGTTCATCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCAGCAAACTTTCTCTACTGGTGAAGATTCTCCAGTAAAACATAATCAGGGAAATTCAGCCACTTTGGAGAATAATTCTGAGAATACAGGTGGTTCACGAAAATTTGTTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACTTAGGTCGACATCACCAAGCTGCTCATATGGGGCCTAATCTGGCTAGCAGTCGCCCTGCAAAAAGGGGAGTTCGCTATTATCCATATAGATTAAAATCTGGCAGACTTAGCCGTcctagatttaaaaaaagtttggcAGCGGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGATGCATTCAGGCAACAAACTCACTTGGCATGGGAGGAGTAACCATACAACCTCATGCTACTGAAACAACAAACATCGGTAGATTGGCAGAACATCAGTGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGGCCTAACAATCTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTGTAGCCTCGCTGGAGGAGAAATATGGAATTCTGCCTGAAAAACTCTATTTGAAGGCAGCAAAACTTTGCAGCGAGCataatattttggtaaattGGCACCAGGAGGGGTTTATTTGTCCTAGAGGTTGTAATGTATCAAAGGATCAAGCTTTGCTCTCTCCTTTAGCATCTCTTCCTAATAGTTCTGTAATGCCCAAATCTGTGAATTTATCTGAACCTGCAAGTGATGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCACATACTTTAAAATTAGGTTCACTGCAAAAAGCTGTTATCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGAACTTATGCATCCTCTTCATATGAATGGGTGTAATGGacacaatataaactcttcTATGCCTTGGGAGACCTTTACCTATGTTACAAAGCCAGTGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTGCCTGCTCATACTCTACCTGCTGTCCTGAAACTTGTGATCATGTATACCTTTTTGGTAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGACGAGAATGGGCGAATAATCTTGGAgGAAGGTTATCTTGTCTATGAGTGTAACCATATGTGCAGATGCAATAGATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATTCTCCGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTGGATGTGCAGGAGGCCTGCGATAGGCTCAAGAGATATGGCACAGAGCATTGCAGTTATTTCTACAACATTGATGCTCGTGTTAATGATATGAGCAGACTGATTGAAGGACAGGCTCAATATGTAATTGATGCTACCAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGctgCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTGTGAACGTGCACATATTGGTCTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTGACATATGACTTTCAGTACGATCTTGTGCCTGGGGAAGGATCTCCTTGTCTTTGCGAATCCTTGAAGTGTAGGGGACGCCTCTACTAG 4491 0.4057 MEVLPCSGVQYAGESDCPQQSSGTAFVYQKEPNCPENGEQVKLAAAQLNESSHKMQGPHIERQGDLSTNSDYQCIGASCCDCQVDDQNEYCGFHDFEEDMINEPCLASENSISVVDTIESESPNNSREGDLSCSEPKWLEGDGSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWADMLLVRSINEFPHPIAYKTHQVGLKMVKDLSVARRFIMQKLVVGMLNMVDQFHFNALTETARDVKVWKEFAMEASHCNGYTDFGRMLLKLHNSILQHHINADWFGHSYPSWVDRCQSANSAESVELLKEELFDSILWNGVNTLWDEPVQPTLGSEWKTWKHDVMKWFSTPPSLLSCKDTQQQSSDDLYQANLQVCRKRPKLEVRRADTHASQVETKAQTIALETDPGFFKNQDTLSTLAAESCKQEGVREVSMATDSPSNLANKWNEIVVEAADSHFSHPKEMESTPTNDMTVAKSVEPGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSAKSEKPVPVDTPMCEGTTVLGTRCKHRALPSSLFCKKHRPHAETEQISNLPQNALKRKHEENYTCSEDMFCKDLALVNVESPLLVDPVSSIGGDSLHGESNFNEKPMHSENDHNAMDSLHCIGSPPYDNKNPCREGPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDSSVGEYFTKLVHSEKARIKSIWGFNDDMDISSVMEEPPLLPSTINANYDKENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQQTFSTGEDSPVKHNQGNSATLENNSENTGGSRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYPYRLKSGRLSRPRFKKSLAAAASYRLRNKANANLKRCIQATNSLGMGGVTIQPHATETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNNLDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHNILVNWHQEGFICPRGCNVSKDQALLSPLASLPNSSVMPKSVNLSEPASDEWEVDEFHCIINSHTLKLGSLQKAVILCDDISFGKESVPVICVVDQELMHPLHMNGCNGHNINSSMPWETFTYVTKPVLDQSLSLDSESLQLGCACSYSTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNRSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVQEACDRLKRYGTEHCSYFYNIDARVNDMSRLIEGQAQYVIDATKFGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGLYASRDIALGEELTYDFQYDLVPGEGSPCLCESLKCRGRLY 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2424 1496 ProSiteProfiles Post-SET domain profile. 1480 1496 IPR003616 -
Ssu2g2424 1496 ProSiteProfiles SET domain profile. 1341 1473 IPR001214 GO:0005515
Ssu2g2424 1496 MobiDBLite consensus disorder prediction 910 942 - -
Ssu2g2424 1496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1496 - -
Ssu2g2424 1496 SMART c2h2final6 948 971 IPR013087 -
Ssu2g2424 1496 SMART c2h2final6 879 902 IPR013087 -
Ssu2g2424 1496 SMART c2h2final6 811 834 IPR013087 -
Ssu2g2424 1496 SMART c2h2final6 845 868 IPR013087 -
Ssu2g2424 1496 Pfam Pre-SET motif 1201 1333 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g2424 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 950 971 IPR013087 -
Ssu2g2424 1496 SUPERFAMILY SET domain 1190 1486 IPR046341 -
Ssu2g2424 1496 MobiDBLite consensus disorder prediction 911 942 - -
Ssu2g2424 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 881 902 IPR013087 -
Ssu2g2424 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 813 834 IPR013087 -
Ssu2g2424 1496 ProSiteProfiles Zinc finger C2H2 type domain profile. 948 976 IPR013087 -
Ssu2g2424 1496 SMART set_7 1341 1479 IPR001214 GO:0005515
Ssu2g2424 1496 Pfam SET domain 1352 1472 IPR001214 GO:0005515
Ssu2g2424 1496 ProSiteProfiles Pre-SET domain profile. 1262 1338 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g2424 1496 ProSiteProfiles Zinc finger C2H2 type domain profile. 845 868 IPR013087 -
Ssu2g2424 1496 Gene3D SET domain 1180 1477 IPR046341 -
Ssu2g2424 1496 SMART preset_2 1198 1325 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g2424 1496 Pfam Zinc finger C2H2-type, 3 repeats 847 972 IPR040689 -
Ssu2g2424 1496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1496 - -
Ssu2g2424 1496 Gene3D Classic Zinc Finger 798 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2424 Ssu-Chr2 82509363 82518887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2424 95 1495 C2H2 Transcription Factor Family AT2G23740 51.368 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g2424 Pre-SET 5.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2424 - - gmx:100786757 2811.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2424 2 82509363 82518887 Ssu2g2424 2 82509363 82518887 ECH