Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2422 ATGTCCCAAGATTTTCAGCAAGGAATCTTCAGCTTCTCGAATGGGTTGGAGAGAGGGAGGGTGAGCCCGCAGCAGCAGATCCGGAGGGACAAGGTGAGGTTGCAAGGAGGGTTCGAGGGGGCGCCATTGGTCGGGATAGAGGAAGAGGAACCGGTGTACGAGACCGCCGGGATGTTGTCGGAGATGTTCAATTTCCCTCCGGCGGGGGAATTGCTGGAGCAGCAGCAGGTGACGGCGGCGTTTCGGGCGGCGAGGCAGGCGGGGGAGTGGTACGGAAACAGACAGCAAGGGGTGAATATGATGATAAGTGGGTTGGGGGATTCGAAGAACCAAAACGGTGTGAATAGCAACGGCCGAGACGCTTTGgttcacagtcacaacaaccaGCAGCAGCACCAGATTTCGAGCATTAATGCAGAGTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCACGCCACTCCTTCCTCAACGCTCCACATGTTGCTTCCAAATCCTTCTTCTAATTCCCTCCAAGGTTTCACTGGTTCAACCGCGGGAGGGTCTTTTAGTCAATTCACATGGGTTCCTGAGAGCGCTCATCAACAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGTTATCGTTGTCCTCTTCGCTGGAAGCAGCGAAGGCCGAGGAATTGAGGATGGGGGATAGTAGTTTTCTATATTTCAATCATCAACAAGGTGGAGGGGGAGGCGGAggtccttcttcttcttccgcGGTTCAGTTTCCGTACAAGAATAATCATCAGACATTGCATCTGCAAGGGGCAATGGGACACGACAACAACCACCAGGGACATGTTGGGTTCGGTTCATCGTCCTTAGGTGTAGTCAATGTTCTGAGAAATTCCAAGTATGTGAAGGCTGCTCAAGAGTTGCTGGAAGAGTTTTGCAGTGTTGGGAGGGGACAGTTTAAGAAGAGCAAGTTCAATAGGCAGAATTCAAACCCTAATTCAAATCCCGGTGGTGGTTCTTCGCCTTCATCAAAAGATGCTCCTCCTATGTCAGCGGCAGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTTGACGAGGTGGACCGGAGATACAACCACTACTGCGAACAAATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTTGGCGCGGCAGTTCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACACAATAACAGCGCAGCTGAAACACAGTTGTGAGCTACTAGGAGAGAAAGATGGGGCAGGGAGCTCAGGTTTGACCAAGGGAGAGACCCCAAGGCTGAAGTTGCTAGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACGTTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACGTAAAGAAGCAGAGTGTgcagaagagagagaaaaggaccAAAGCAACAGCAACAGTGGCAACCTGGCACAAACTCCAACCACACCAGCAGCAGCGGCTACAACATCAACAGCAGCAACAGCGCCACCACCACccacaataacaacaacgacaGCAACAACAAAACCAACAGGGAAAAGATACGATATCAATGCCACCGAAAGCGACCCTTCACTCGTTGCAATCAATAGACAAGGCTTCTTGGAAAACCAAGCAAAGCAgtccacctccaccaccaccacctccaccactaTCATGGCCACCCTCAGCGCCACCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTCGACTCAGACCTGTCTCCACACAGATTAATGGCAACCGATGACACGTGTCGCTTGGTCACCTCAGATTTTGGGACCGCATCTGCAAGCACTGACATTGGATCCACTCTCATTAGATTTGGGACCACAGCCGGTGACGTGTCACTCACCCTAGGGCTACGCCACGCCGGAAACATGCCCGAGAAAACTCCTTTCTCCGTTAGAGACTTTGGAGGCATTTAA 2214 0.4914 MSQDFQQGIFSFSNGLERGRVSPQQQIRRDKVRLQGGFEGAPLVGIEEEEPVYETAGMLSEMFNFPPAGELLEQQQVTAAFRAARQAGEWYGNRQQGVNMMISGLGDSKNQNGVNSNGRDALVHSHNNQQQHQISSINAESAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSTAGGSFSQFTWVPESAHQQGGVVEGQGLSLSLSSSLEAAKAEELRMGDSSFLYFNHQQGGGGGGGPSSSSAVQFPYKNNHQTLHLQGAMGHDNNHQGHVGFGSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNPGGGSSPSSKDAPPMSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDTITAQLKHSCELLGEKDGAGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQERKEAECAEEREKDQSNSNSGNLAQTPTTPAAAATTSTAATAPPPPTITTTTATTKPTGKRYDINATESDPSLVAINRQGFLENQAKQSTSTTTTSTTIMATLSATASEVAPPVSQCFDSDLSPHRLMATDDTCRLVTSDFGTASASTDIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGGI 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2422 737 ProSiteProfiles 'Homeobox' domain profile. 476 539 IPR001356 GO:0003677
Ssu2g2422 737 Pfam Homeobox KN domain 496 535 IPR008422 GO:0003677|GO:0006355
Ssu2g2422 737 Coils Coil 542 565 - -
Ssu2g2422 737 MobiDBLite consensus disorder prediction 327 351 - -
Ssu2g2422 737 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 47 726 - -
Ssu2g2422 737 SUPERFAMILY Homeodomain-like 481 546 IPR009057 -
Ssu2g2422 737 SMART prehox3 294 427 IPR006563 -
Ssu2g2422 737 MobiDBLite consensus disorder prediction 327 360 - -
Ssu2g2422 737 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 726 - -
Ssu2g2422 737 MobiDBLite consensus disorder prediction 564 609 - -
Ssu2g2422 737 MobiDBLite consensus disorder prediction 548 615 - -
Ssu2g2422 737 Gene3D - 482 544 - -
Ssu2g2422 737 MobiDBLite consensus disorder prediction 548 563 - -
Ssu2g2422 737 MobiDBLite consensus disorder prediction 104 134 - -
Ssu2g2422 737 SMART HOX_1 479 543 IPR001356 GO:0003677
Ssu2g2422 737 CDD homeodomain 479 540 IPR001356 GO:0003677
Ssu2g2422 737 Pfam Associated with HOX 299 426 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2422 Ssu-Chr2 82460569 82467095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2422 1 526 Homeobox Transcription Factor Family AT4G36870 50.596 5.30e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu2g2422 POX 3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2422 - - gmx:100786231 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2422 2 82460569 82467095 Ssu2g2422 2 82460569 82467095 ECH
Ssu2g2422 2 82460569 82467095 Ssu6g1952 6 35233973 35241262 PCT