Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2419 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTAATCATAAAATTGCACACGGACAATACCAAGGCAAATATGCAGAGGACAGAATTTGGGACAGTCATCGTAGTTCAATGGATGATCTGACGGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTTTCTCTATTAGAGAAGGAtcagaaagggaaaaaaattgttgAGGATGACTCTCAATCTGAAGATGGGCAGCTTTGTATAATTGATGATGAGGAAGATGAACATATTGGTAAAGTTCATCTAGATGAAGATGAATATCTTGCTAAAATTCAACAAGATGAAGATGAGCGTCTCGCTAAAATTCAACAAGATGAAGTTGAACATCTTGCTAAAATTCAACTAGATGAACATGAACGTCTTGCTAAAGCTCAACTTGAGGAAGATGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTAAACATTGGTTCTCCTCCTCAATATGACAATGATTCTTCATTTCTATCTTTTCCTCACCTCTTCCCCCCTGGATATAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCACAATGCTTCTGCTGCCATGCATGCCATCTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGCAGAAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCAGCTGGCCTCATTGAATATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGTACTCTTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGATACAAAATATCTTTTCCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGaaggtttaaatatgaaattggaGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTTTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCATCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACTATTTTGAGGAGACCAAGGATTGGGGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTCGTTGTGAAGTGACAGCTATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCCAACCTCAGCCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGAGTCAGAGCTCTATTCTGGATCTGGGAATGATGgtgcatcatcatcatcgtcttcgtcatcatcatcaccttcctcctcttttgcatcatcaaaaaagggtaAACGGTCTGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAAGCAATGCTCAAGTTGAGTGACAAACAGTGTTTTGAGTTGCGTCAAAGACCCAGGCAGAGTTTCAAACACGTACAAAATGTTCGAAACTCAAGCCACTACAATCAGCCACCGAGGCTAAATGAAGAAAAACCACTGGAGACTCAACCATATGAACACCAGAAGGAACTTCAAGCCTATCCGGCGCATCCAAGTGACATCCTTTGTTGTCAAGCCCAGCTAACTCTGTCTGAAATGGAAGCACCTGACTTGCATCCTTGTAAGGTGTCCAACGAGTAG 1857 0.3953 MGWFTKLLKGSNHKIAHGQYQGKYAEDRIWDSHRSSMDDLTDIEKEDIDRAIALSLLEKDQKGKKIVEDDSQSEDGQLCIIDDEEDEHIGKVHLDEDEYLAKIQQDEDERLAKIQQDEVEHLAKIQLDEHERLAKAQLEEDEQLARAIQESLNIGSPPQYDNDSSFLSFPHLFPPGYRICAGCKTEIGQGRFLSCMGAVWHPQCFCCHACHLPITDYEFSMSSNRPYHKSCYRQKHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHELDGTLRCCSCERMEPRDTKYLFLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRAIDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNDGASSSSSSSSSSPSSSFASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKLSDKQCFELRQRPRQSFKHVQNVRNSSHYNQPPRLNEEKPLETQPYEHQKELQAYPAHPSDILCCQAQLTLSEMEAPDLHPCKVSNE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2419 618 ProSitePatterns LIM zinc-binding domain signature. 180 214 IPR001781 -
Ssu2g2419 618 Pfam Protein DA1 329 533 IPR022087 -
Ssu2g2419 618 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 111 536 - -
Ssu2g2419 618 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 261 - -
Ssu2g2419 618 ProSiteProfiles LIM domain profile. 178 238 IPR001781 -
Ssu2g2419 618 MobiDBLite consensus disorder prediction 548 584 - -
Ssu2g2419 618 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 139 152 IPR003903 -
Ssu2g2419 618 MobiDBLite consensus disorder prediction 548 564 - -
Ssu2g2419 618 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 115 - -
Ssu2g2419 618 PANTHER PROTEIN DA1-RELATED 2 1 115 IPR045218 -
Ssu2g2419 618 Pfam LIM domain 180 235 IPR001781 -
Ssu2g2419 618 PANTHER PROTEIN DA1-RELATED 2 111 536 IPR045218 -
Ssu2g2419 618 SMART lim_4 179 231 IPR001781 -
Ssu2g2419 618 CDD LIM_DA1 180 232 - -
Ssu2g2419 618 SMART uim 139 158 IPR003903 -
Ssu2g2419 618 SMART uim 43 62 IPR003903 -
Ssu2g2419 618 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 205 - -
Ssu2g2419 618 MobiDBLite consensus disorder prediction 469 493 - -
Ssu2g2419 618 MobiDBLite consensus disorder prediction 469 491 - -
Ssu2g2419 618 Gene3D Cysteine Rich Protein 177 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2419 Ssu-Chr2 82378527 82390110 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g2419 DA1-like 1.5e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2419 - - gmx:100817969 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2419 2 82378527 82390110 Ssu2g2419 2 82378527 82390110 ECH
Ssu2g2419 2 82378527 82390110 Ssu6g1955 6 35348727 35351506 PCT