Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2418 ATGGACCTGGCCGAATTATCCACAGAGCAGGTTCTGAGGAGGGACATCCCTTGGGAGACCTACATGTCCACTAAGCTGATCTCAGGAACAAGCCTTCAGCTCTTAAGGCGTTATGATCATCGATCAGAAAGTCACAGAGCACAGTTGCTGGATGATGATGGTCCAGCTTATGCTCGTGTATTTGTTCGTGTTTTGCGGGATATTTTTAAAGAAGAGACTGTAGAATATGTTTTAGCGTTGATAGATGGAATGCTGGAAGCAAACCTGAAAAGAGCAAGACTGTTTCATGATAAGACCCTCGCAGATGAAGACACTTATGAACCTTTCTTAAAAAGAAAGCAAAATAGggagtatgtatgtatgtactaTTTCCTAAGCAAAGTATTGCTTTGGAAAGGAAATTGGTTTTTACAGGAGAAAAGTTGTAAGATCCTTGCTTTAATAGCCAGTGCCAGGCCTAAAAATCAGAATGGCACTGTAGCAAATGGAGAAGCATCAAACTCAAAGAAATCATTTACCACTGTTGATGACGTTTTGATACGATTGGTAAAGTGGCTTTGTGAACAGCTGAAGAAGCCTTCTCATCCAACTCGGGGTGTCCCAACTGCTATCAATTGCCTAGCAACTTTACTTAAGGAACCTGTGGTTAGATCTTCCTTTGTTCAAGTGGATGGGATCAAGTTGCTTGTGCCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATGTGGCTCTTATCTTATTATGAGCCAGCAATTGAATACCTGGCTACTTCAAGAACCCTTCCGCGACTTATTGATGTTGTTAAGAGCTCTACAAAGGAGAAGGTTGTTAGAGTTGTTGTCTTAACCTTTAAGAACTTGTTGTCAAAAGGGATGTTGGGTGCTCAAATGGTTGACCTTCAGCTACCACAAGTTATTCAGAGCTTGAAAGCACAAGCATGGAGTGACGAGGACTTATTGGAGGCACTGAAATACCTAGAAGAAGGGCTTAAGGATAACATTAAGAAACTAAGTTCTTATGACAAGTATAAACAAGATGTTCTCCTTGGCCATCTGGATTGGTCTCCTATGCACAAAGATCCCATATTTTGGCGAGAAAATATTACCAACTTTGAAGAGAATGACTTCCAGATCTTTAGGGtcctaattacaattttggaCACGTCCAGTGATCCAAGGACTCTAGCTGTTGCATGCTTTGATCTTTCACAGTTCATCCAGCACCATCCTGCTGGGCGTATCATTGTGACTGACCTTAAAGCCAAGGAACGagtaatgaaattaatgaaTCACGAGAATGCTGAAGTTACTAAAAATGCGCTGCTCTGCATCCAATGGCTTTTCTTAGGTGCAAAGTATGCCAGCTTCTTGCAGGCCTAG 1410 0.405 MDLAELSTEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYARVFVRVLRDIFKEETVEYVLALIDGMLEANLKRARLFHDKTLADEDTYEPFLKRKQNREYVCMYYFLSKVLLWKGNWFLQEKSCKILALIASARPKNQNGTVANGEASNSKKSFTTVDDVLIRLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPVVRSSFVQVDGIKLLVPLISPASTQQSIQLLYETCLCMWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTFKNLLSKGMLGAQMVDLQLPQVIQSLKAQAWSDEDLLEALKYLEEGLKDNIKKLSSYDKYKQDVLLGHLDWSPMHKDPIFWRENITNFEENDFQIFRVLITILDTSSDPRTLAVACFDLSQFIQHHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQWLFLGAKYASFLQA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2418 469 Pfam V-ATPase subunit H 346 457 IPR011987 GO:0000221|GO:1902600
Ssu2g2418 469 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 469 IPR004908 GO:0000221|GO:0046961|GO:1902600
Ssu2g2418 469 PIRSF V-ATP_synth_H 1 468 IPR004908 GO:0000221|GO:0046961|GO:1902600
Ssu2g2418 469 Gene3D - 360 461 IPR038497 -
Ssu2g2418 469 Gene3D - 3 348 IPR011989 -
Ssu2g2418 469 Pfam V-ATPase subunit H 6 340 IPR004908 GO:0000221|GO:0046961|GO:1902600
Ssu2g2418 469 SUPERFAMILY ARM repeat 8 459 IPR016024 -
Ssu2g2418 469 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 415 422 IPR018506 GO:0020037
Ssu2g2418 469 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2418 Ssu-Chr2 82367744 82375770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2418 1 469 Primary Pumps ATPases(2) AT3G42050 75.267 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2418 K02144 - gmx:100788723 797.349