Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2411 ATGGCTgtgttctttctctttctccctctccGTTCTCAGATTCTTTCTCTTGCATTCATGCTGCTTTTCACTAATATCGTAGCTCAATCACAACAGACCAATGGAACAGACTTTTCATGCCCTTCTGATTCACCTCCTTCCTGTGAAACCTATGTAACATACATTGCCCAGTCACCAAATTTTTTGAGTCTGACTAGCATATCCAATATATTTGATACCAGTCCTTTATCCATTGCAAGAGCCAGTAACTTGGAGCCCGAAGATGACAAGCTGATTCCAGGCCAAGTCTTACTGATACCAGTAACCTGTGGTTGCACTGGAAACCGCTCTTTTGCCAATATCTCCTACGTGATCAATCAGGGTGATAGCTTCTTCTTTGTTGCAACCACTTCATACGAGAATCTCACGAATTGGCGCGTAGTGATGGATTTAAACCCCGGTCTGAGTCCATATACGTTGCCAATAGGGATCCAAGTAGTATTTCCTTTATTCTGCAAGTGCCCTTCAAAGAACCAATTGGACAAAGGGATGAAGTACCTGATTACTTACGTGTGGCAGCCCAGTGACAATGTTTCCCATGTAAGTGCTAAGTTTGCTGCATCACCAGAGGACATACTGACTGAGAACAACTATGGTCAAAACTTCACTGCCGCAAACAACCTTCCAGTTTTTATCCCAGTGACACGCTTGCCAAATCTAATTCAGTCTCCTTCAGATGGAACAAAAAGCAGGACTCGTCTTCCGGTTATAATTGGTATTAGCCTGGGATGCACAACTCTGGTTGTGGTTTTTACGGTATTGCTGGTTTATGTATATTGTCTGAAAATGAAGAGTTTGAATAAGAGTGCTTCATCAGCTGAAACTGCAGATAGGCTACTTTCTGGAGTTTCAGGCTATGTAAGCAAGCCTACCGTGTATGAAACTGATGCGATCATGGAAGGTACCATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCAAACATAGAGGGTAAGGTTTTAGCGGTGAAAAGATTCAAGGAAGATGTCACGGAGGAGCTGAAAATTTTGCAGAAGGTGAATCACGGAAATCTGGTGAAACTAATGGGTGTCTCATCAGACAATGATGGGAATCGTTTCGTGGTTTATGAATATGCTGAAAATGGGTCTCTAGATGAGTGGCTATTCTCCAAGTCTTCTTCGGACACATCAAACTCAGTGGCCTCCCTTACATGGTGTCAGAGGATAAGCATAGCAGTGGATGTTGCAATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACAAGCAGCAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTCTCCATGGCCAGCACTTTTACCAACCCCATGATGCCAAAAATAGATGTCTTTGCATTTGGGGTGGTTCTGATAGAGTTGCTTACTGGCAGGAAAGCCATGACAACCAAAGAAAATGGGGAGGTGGTTATGCTGTGGAAGGACATTTGGAAGATCTTTGAtcaagaagagaatagagaggaGAGGCTCAGAAGATGGATGGATCCTAAGTTAGAGAGTTATTATCCTATAGATTATGCTCTCAGCTTGGCCTCCTTGGCTGTGAATTGTACTGCAGATAAGTCTTTGTCCAGACGAACCGTTGCAGAAATTGTCCTTAGCCTCTCCCTTCTCACTCAACCATCTCCCGCGACATTAGAGAGATCCTTGACTTCTCCTGGATTAGATGTAGAAGCTACTCAAATTGTCACTTCCATAGCAGCTCGTTGA 1797 0.424 MAVFFLFLPLRSQILSLAFMLLFTNIVAQSQQTNGTDFSCPSDSPPSCETYVTYIAQSPNFLSLTSISNIFDTSPLSIARASNLEPEDDKLIPGQVLLIPVTCGCTGNRSFANISYVINQGDSFFFVATTSYENLTNWRVVMDLNPGLSPYTLPIGIQVVFPLFCKCPSKNQLDKGMKYLITYVWQPSDNVSHVSAKFAASPEDILTENNYGQNFTAANNLPVFIPVTRLPNLIQSPSDGTKSRTRLPVIIGISLGCTTLVVVFTVLLVYVYCLKMKSLNKSASSAETADRLLSGVSGYVSKPTVYETDAIMEGTMNLSEQCKIGESVYKANIEGKVLAVKRFKEDVTEELKILQKVNHGNLVKLMGVSSDNDGNRFVVYEYAENGSLDEWLFSKSSSDTSNSVASLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMASTFTNPMMPKIDVFAFGVVLIELLTGRKAMTTKENGEVVMLWKDIWKIFDQEENREERLRRWMDPKLESYYPIDYALSLASLAVNCTADKSLSRRTVAEIVLSLSLLTQPSPATLERSLTSPGLDVEATQIVTSIAAR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2411 598 SMART LysM_2 53 100 IPR018392 -
Ssu2g2411 598 SMART LysM_2 115 162 IPR018392 -
Ssu2g2411 598 Pfam Protein tyrosine and serine/threonine kinase 342 463 IPR001245 GO:0004672|GO:0006468
Ssu2g2411 598 ProSiteProfiles LysM domain profile. 52 99 IPR018392 -
Ssu2g2411 598 SUPERFAMILY Protein kinase-like (PK-like) 318 564 IPR011009 -
Ssu2g2411 598 Gene3D Transferase(Phosphotransferase) domain 1 466 575 - -
Ssu2g2411 598 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 21 598 - -
Ssu2g2411 598 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 21 598 - -
Ssu2g2411 598 ProSiteProfiles Protein kinase domain profile. 286 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2411 598 ProSitePatterns Tyrosine protein kinases specific active-site signature. 434 446 IPR008266 GO:0004672|GO:0006468
Ssu2g2411 598 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Ssu2g2411 598 Pfam LysM domain 63 100 IPR018392 -
Ssu2g2411 598 Gene3D Transferase(Phosphotransferase) domain 1 383 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2411 Ssu-Chr2 81955567 81957363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2411 1 571 Receptor kinase-like Gene Family AT2G33580 29.709 6.60e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu2g2411 PK_Tyr_Ser-Thr 6.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2411 - - gmx:100301877 1053.12