Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2410 ATGCATCTCTTTCCCTTCACCCCTCTCATCATTTTCACCCTGTTGATCCACAGCTTCTCTCTGATTCTGGGGCAGCAACCTTATATTGGTTTAGGCACAGTAGCGTGCCCTCGAAGGGGTAACGCAAATTCCATCCGTGGTTACACTTGTAATGGTGCAAACCATAGTTGCCAAGCCTACCTTACCTTCAGATCTCAACCCATTTACAACTCTGTCTCTACGATATCTACTTTGTTGGGTTCTGACCCATCTCAGCTTGCTAAAATAAATTCTGTTTCCCGGAATGACACCTTTGAAATAAACAAGTTGGTGCTTGTTCCGGTCAACTGTTCTTGTGCAGGTGAGTATTATCAGACAAACACATCCTATGTGTTCCAGAATGCAGAAACTTACTTCTTGATTGCTAACAACACTTTTGAGGGCCTCACAACATGTCAAGCTTTGATGCATCAAAACTACAATCCTGCAAATATATACCCCGGTAGAAAACTTGCAGTGCCTCTTAGATGTGCTTGTCCCACAAAGAATCAAACCGAGAAAGGCATCAGGTACCTCTTAAGTTACCTCGTCAATTGGGGTGATTCTGTTTCTCTCATTAGTGAGAAATTTGGTGTCAACTTTATGACCACTGTTGAAGCTAATAACCTTACTTTGACACAAGCCACGATCTATCCCTTTACCACACTTCTAGTTCCCCTTCATGATAAGCCCTCCAGTTCTCAAACCGTTTCGCCAACTCAACACACTCCACCACCCTCACCTCCCTCTTCTGATAAAAGCTCAAACAAAACATGGGTGTATATAGTTGTTGGAGTTGTTGTAGGAGCTATTGCCTTAATATCAGTTCTCTCTGCTGTCATTTTCTTCACACGCTAtcgcaaaaataaaaacaaagatgaCTCAGTGGTAGTGCCCAAGAGTTTTGAGGCAGTTGAGAAAAAACCACGAGGGaaagtaattgaaaaattgTCAGAGATCATATCTGGCATAGCTCAATCGTTCAAGGTGTATGCTTTTGAGGAACTAGAGCGTGCAACAGATAACTTTAGTCCTAGCTGCAGGATCAAAGGTTCTGTTTATCGCGGTGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGAGAAGTGTCAAACGAGATAGAGACACTGAACAAGATCAACCATTCCAATGTTATACGCCTTTCCGGGGTTAGCTTCCACGAGGGGCGTTGGTACCTTGTTTATGAGTACGCTGCTAATGGAGCCTTGAGTGAATGGATCTACTTCAACAACGTGGATGGGAAGTTTCTGAGTTGGATGCAGAGAATGCAGATTGCATTGGATGTGGCCACAGGACTTGACTATCTTCACAGTTTCACTTCTCCTCCTCATATCCACAAGGATATTAATAGTAGTAACATTCTTCTGGATGGTGATTTCAGGGGAAAGGTCGCACACTTAAGCCTTGCTAGGTGTTTGGAAGGAGCGGAGGATCAATTTCCCGCGACAAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCGGAGTATTTGGAACATGGTCTTGTGTCTACAAAGCTTGATGTGTATGCTTTTGGGGTACTGATGCTGGAAGTGCTCACTGGAAAAGAGGTTGCTGCTATTTTGACTGAAGATGAGACAAACTTGTCGCATGTGTTAAGTGCCATACTGGGTGAGGAAAGTGGCCAGGAGAGGTTGAAGGAGTTTGTGGATCCCTCTTTGCGAGAAAATTGTCCACTGGAACTTGTCATGTTTGTGATTGAAATGATTGATAGTTGCATAAAGACAGATCCAGCAAGTCGCCCTAGTGTGCATGAGATTGTGCAATCTCTGTCAAGAACCCTGAACTCTTCACTGAGTTGGGAAAGGTCAATGAATGTCCCAGGAAACTAG 1899 0.4308 MHLFPFTPLIIFTLLIHSFSLILGQQPYIGLGTVACPRRGNANSIRGYTCNGANHSCQAYLTFRSQPIYNSVSTISTLLGSDPSQLAKINSVSRNDTFEINKLVLVPVNCSCAGEYYQTNTSYVFQNAETYFLIANNTFEGLTTCQALMHQNYNPANIYPGRKLAVPLRCACPTKNQTEKGIRYLLSYLVNWGDSVSLISEKFGVNFMTTVEANNLTLTQATIYPFTTLLVPLHDKPSSSQTVSPTQHTPPPSPPSSDKSSNKTWVYIVVGVVVGAIALISVLSAVIFFTRYRKNKNKDDSVVVPKSFEAVEKKPRGKVIEKLSEIISGIAQSFKVYAFEELERATDNFSPSCRIKGSVYRGVINGDLAAIKKIEGEVSNEIETLNKINHSNVIRLSGVSFHEGRWYLVYEYAANGALSEWIYFNNVDGKFLSWMQRMQIALDVATGLDYLHSFTSPPHIHKDINSSNILLDGDFRGKVAHLSLARCLEGAEDQFPATRHIVGTRGYMAPEYLEHGLVSTKLDVYAFGVLMLEVLTGKEVAAILTEDETNLSHVLSAILGEESGQERLKEFVDPSLRENCPLELVMFVIEMIDSCIKTDPASRPSVHEIVQSLSRTLNSSLSWERSMNVPGN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2410 632 ProSiteProfiles Protein kinase domain profile. 305 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2410 632 MobiDBLite consensus disorder prediction 237 261 - -
Ssu2g2410 632 Gene3D LysM domain 172 247 IPR036779 -
Ssu2g2410 632 Gene3D Phosphorylase Kinase; domain 1 322 412 - -
Ssu2g2410 632 CDD LysM 187 231 IPR018392 -
Ssu2g2410 632 SMART LysM_2 187 232 IPR018392 -
Ssu2g2410 632 SMART LysM_2 122 167 IPR018392 -
Ssu2g2410 632 Pfam LysM domain 188 232 IPR018392 -
Ssu2g2410 632 Pfam Protein kinase domain 359 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2410 632 Gene3D Transferase(Phosphotransferase) domain 1 414 627 - -
Ssu2g2410 632 ProSiteProfiles LysM domain profile. 186 231 IPR018392 -
Ssu2g2410 632 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 627 - -
Ssu2g2410 632 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 9 627 - -
Ssu2g2410 632 SUPERFAMILY Protein kinase-like (PK-like) 331 613 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2410 Ssu-Chr2 81949642 81951540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2410 4 626 Receptor kinase-like Gene Family AT2G23770 43.128 1.01e-170 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu2g2410 Pkinase 7.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2410 - - gmx:100815842 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2410 2 81949642 81951540 Ssu2g2410 2 81949642 81951540 ECH