Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2409 ATGGCCTCTCATGGTACTAATCCTATCCCTTGGCACATTGTTTTGACAATTGTCATTGTTGCCCTTTACACTCCAAACCTTAGTGTCGGAAAGCAATCCAAGATAAATGGcttgaaaatgaatgtgattGATCGATGTTGGAGACCGAATCCTGAATGGAGGAGGCATCGACCTCAACTAGCAACATGTTCCGTGGGATACACTGGCAAGATGACAAACAACATTGGTAAAGACCTCATCCATTATAAAGTTACTAACCCAAGTGATGATCCTATAAACCCCAAACTTGGTACCTTGAGGTATGGAGCTTCCGCAATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAACTTGAGAGACCCCTTTTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTCAACATTGCTGATAATGCATGCTTAATGATctttaagGCCACCAACATAATCATTCACAACATTCGGGTTCATCATTGCAAACCTCAAGCCCCAGGGATGGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTGGGTCACGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGCCAAGATGGCTTACTTGATGTAACGCGGGGTTCCACTAATGTGACTATATCCAATAACTGGTTCAAAGACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAGAACATGAAGGTTACTGTTGTGTACAACCATTTTGGACCTAATTGCAATCAGCGCATGCCAAGgaTTCGCTATGGATATGCACATGTAGCCAACAATCTTTACTTGGGATGGGTGCAATATGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCAACAACAGGGAGAAAAGAGGTGACATGGAGAAAGAATAGTCATAAAAATGGGGACAAATGGGAATTTCATTCAGTGAGAGACGCTTTTGAAAATGGGGCTTCCTTCATGATAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAACAAGGAGCAATGTTTTAAAGTTGTTAAGGCCAAATTTGTGAGATCATTGACACGTTCATCAGGCGTATTACGATGCAATAAAACCTCTGTATGTTGA 1176 0.409 MASHGTNPIPWHIVLTIVIVALYTPNLSVGKQSKINGLKMNVIDRCWRPNPEWRRHRPQLATCSVGYTGKMTNNIGKDLIHYKVTNPSDDPINPKLGTLRYGASAIQGKVWITFQRDMHIKLERPLFISSFTTIDGRGVNVNIADNACLMIFKATNIIIHNIRVHHCKPQAPGMVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFKDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYLGWVQYAIGGSMEPSLKSEANLFIAPTTGRKEVTWRKNSHKNGDKWEFHSVRDAFENGASFMITKGGRVPKPNYNKEQCFKVVKAKFVRSLTRSSGVLRCNKTSVC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2409 391 SUPERFAMILY Pectin lyase-like 80 347 IPR011050 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Ssu2g2409 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Ssu2g2409 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
Ssu2g2409 391 PANTHER PECTATE LYASE 2 388 - -
Ssu2g2409 391 Pfam Pectate lyase 128 308 IPR002022 -
Ssu2g2409 391 Gene3D - 40 384 IPR012334 -
Ssu2g2409 391 SMART amb_all 117 314 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2409 Ssu-Chr2 81940077 81941584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2409 71 318 Polysaccharide Lyase AT5G09280 69.758 7.33e-138 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2409 K01728 - gmx:100780437 723.776