Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2406 ATGACAAGTGGTTTTGGGGAATCAACGAGAGCGTCTGCACCGAGCCCATCATGCTCGGGGAACAGTTCAAATGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTGGCACAAGACCCAGTGATCACTCTGTGTGGTCATTTATTCTGTTGGCCATGCCTCTATAGGTGGCTCCATCATCACTCCCATTCTCAGGAATGCCCCGTTTGCAAGGCCGTTGTGCAGGAAGAGAAATTGGTGCCTCTTTATGGAAGGGGCAAGACACAGACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCTTCGGGGCAGAGGCCGCAAACGGCGCAGCCCCCACCGCCTCCCGAGTCAAACCCTTTTGGGAATTATGGGTTTGGACTCATGGGGGGTTTCATTCCCATGGCAACTGCCAGATTTGGAAACTTCACGCTTTCCACTGCTTTTGGCGGGTTTATCCCGTCCCTGCTCAACATTCATTTTCATGGCTTTCAGGATGCCACTGTCTATGGGACGACGTCTGGTTATCCCTTCGGGTTTAACGCCTTCCATGGAGGGAACACGCGGGGCTTTTCGCAGGCAACTGGCCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTTTGTTGATTGGATTTCTTGTCCTTCTTACGGTTATTTTTGTGTGGTAA 693 0.5094 MTSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAQPPPPPESNPFGNYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNAFHGGNTRGFSQATGQVQRQEDNVLKNLLLLIGFLVLLTVIFVW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2406 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 95 IPR013083 -
Ssu2g2406 230 SMART ring_2 31 71 IPR001841 -
Ssu2g2406 230 MobiDBLite consensus disorder prediction 111 125 - -
Ssu2g2406 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Ssu2g2406 230 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g2406 230 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 228 - -
Ssu2g2406 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu2g2406 230 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Ssu2g2406 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Ssu2g2406 230 SUPERFAMILY RING/U-box 27 84 - -
Ssu2g2406 230 MobiDBLite consensus disorder prediction 84 125 - -
Ssu2g2406 230 CDD RING-HC_AtRMA_like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2406 Ssu-Chr2 81867617 81868309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2406 21 228 C3H Transcription Factor Family AT2G23780 63.380 1.16e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2406 K10666 - gmx:100814783 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2406 2 81867617 81868309 Ssu2g2406 2 81867617 81868309 ECH