Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2393 ATGGAACCTCAACAACCACAAGGGAGCCAACAACACTCACCAAACGAGGATGGTGGCAGTGGAAAAGGGGGGTTTCTGAGCAGGCAAAGCAGTACACGGTGGACTCCCACAACCGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAGCAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGCAAGATTGAAGGCAAGAATGTCTTTTACTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATAATGTGCCCATGCAAAGAGGCCCAACTAATGCTGCTGCTTGGAAACCAGAAGATCCCAGTCACACCAAGTATTGTAATATTTCATCTACTGGGATCTCTTCGGCATCATCTTCTGCTGAGATGGTTACTGTGGGACAGATGGGGAATTATGGGTATGGATCTGTGCACATGGAGAAAAGTTTTAGGgaCTGCTCAATATCAGCTGGGGGTAGCAGTGGCCATGTTGGAACAAACCACAACTTGGGATGGGTCGGTGTGGACGCATATTCCTCAGCCTACGCCAATTTCTTTGACAAAATAAGGCCAACTGAAGAAACcctggaagaagaagaagaggatggTGCTGCTGGGATTGAAACCCTCCCTTTATTCCCTATGCACGGTGAGGACATCCATGGCTATTGCAACCTCAAGTCCAATTCTTCTAACTATGATGGAAGCAGCTGGTATCATACTGAAGATGGGTTCAAGTTCAACAATGGTTCTCGTGCTTCCTTGGAGCTCAGTCTCAACTCCTACACCCGCAGATCTCCAGATTTCGCTTAA 843 0.4567 MEPQQPQGSQQHSPNEDGGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDNVPMQRGPTNAAAWKPEDPSHTKYCNISSTGISSASSSAEMVTVGQMGNYGYGSVHMEKSFRDCSISAGGSSGHVGTNHNLGWVGVDAYSSAYANFFDKIRPTEETLEEEEEDGAAGIETLPLFPMHGEDIHGYCNLKSNSSNYDGSSWYHTEDGFKFNNGSRASLELSLNSYTRRSPDFA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2393 280 ProSiteProfiles 'Homeobox' domain profile. 27 93 IPR001356 GO:0003677
Ssu2g2393 280 SUPERFAMILY Homeodomain-like 25 99 IPR009057 -
Ssu2g2393 280 Pfam Homeodomain 31 92 IPR001356 GO:0003677
Ssu2g2393 280 MobiDBLite consensus disorder prediction 93 116 - -
Ssu2g2393 280 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 273 IPR044555 GO:0003700|GO:0099402
Ssu2g2393 280 MobiDBLite consensus disorder prediction 1 37 - -
Ssu2g2393 280 CDD homeodomain 32 94 IPR001356 GO:0003677
Ssu2g2393 280 MobiDBLite consensus disorder prediction 1 17 - -
Ssu2g2393 280 PANTHER PROTEIN WUSCHEL 1 273 - -
Ssu2g2393 280 Gene3D - 26 92 - -
Ssu2g2393 280 SMART HOX_1 29 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2393 Ssu-Chr2 81599123 81600668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2393 25 229 Wox Gene Family AT2G17950 46.185 1.58e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu2g2393 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2393 - - vra:106776674 453.751