Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2390 ATGGCCATCAAAAAATCCAATAAACTACCACAAGCTGTTGTTCTCAAGCAAATTCTCAAAAGATGCTCAAGTTTTGGAAAGAAGCAGACCTACAATGAAGAGGGTCTTCCTGATGATGTGCCAAAAGGCCATTTTGCGGTCTATGTTGGGGAGAACAGGACCAGATACATTATCCCAATTTCATGGCTAGCTCACCCTCAGTTTCAAAGTCTTCTCCAAAGAGCTGAGGAGGAGTTTGGCTTCAACCATGACACGGGACTTACCATACCCTGTGATGAAGTTGCTTTTGAGTCCCTAACCTCAATGATGAGATAA 315 0.4317 MAIKKSNKLPQAVVLKQILKRCSSFGKKQTYNEEGLPDDVPKGHFAVYVGENRTRYIIPISWLAHPQFQSLLQRAEEEFGFNHDTGLTIPCDEVAFESLTSMMR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2390 104 Pfam Auxin responsive protein 17 103 IPR003676 GO:0009733
Ssu2g2390 104 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 104 - -
Ssu2g2390 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2390 Ssu-Chr2 81558578 81558892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2390 5 103 Calmodulin-binding Proteins AT4G34750 42.424 5.01e-22 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2390 K14488 - gmx:100798840 209.149