LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2387	ATGTCTGCCGCCGGAGAAGATGTTGCTCCCGCCCTCGAAAAGCCGGTGGAGGAGATGAAGGCACCAGAGGTGCCGAAGCCTGCGAAGGAGAAAAAACCTAGGGCTCCGAGAGAAAAGAAGCCCAAACAAGCCAAAACCGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGACGGCGCTGAACGAGAAGGGAGGTTCGAGCCCCTACGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGCCTGCAACTGAAGAACCAAGCCGCGAGGGGGAAACTAGTGAAGATCAGGGCTTCGTACAAGTTGTCCGAAACCgcgaagaaggagaaaaaggagAGCACGGCCAAAGCGACGAAGGCCAACGCAGAGGAAAGGGAGCCGCGCCCGAAGCGAAACAAAACCATAACCGCCGCGAGCAATAGAACCGAGACGGTTAAAAAGGCCACGAAGAAGGCTGGGCCGAAGAAGACGAAGAAAGTGTCCACGCCGCGAAGCCCAAACAGCCCAAGTCCATTAAGTCTCCGGCCAAGAGGGCCCGGAAAGCCACCGTTGCTGCGGCGTGATGCTTGA	612	0.5392	MSAAGEDVAPALEKPVEEMKAPEVPKPAKEKKPRAPREKKPKQAKTASHPPYFQMIKEALTALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIRASYKLSETAKKEKKESTAKATKANAEEREPRPKRNKTITAASNRTETVKKATKKAGPKKTKKVSTPRSPNSPSPLSLRPRGPGKPPLLRRDA	203

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g2387	203	MobiDBLite	consensus disorder prediction	11	34	-	-
	Ssu2g2387	203	MobiDBLite	consensus disorder prediction	1	52	-	-
	Ssu2g2387	203	SMART	h15plus2	46	113	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Ssu2g2387	203	CDD	H15	46	125	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Ssu2g2387	203	PRINTS	Histone H5 signature	62	79	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Ssu2g2387	203	PRINTS	Histone H5 signature	35	56	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Ssu2g2387	203	PRINTS	Histone H5 signature	163	180	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Ssu2g2387	203	PRINTS	Histone H5 signature	132	146	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Ssu2g2387	203	PANTHER	HISTONE H1	8	180	-	-
	Ssu2g2387	203	MobiDBLite	consensus disorder prediction	115	146	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2387	Ssu-Chr2	81464132	81464843	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2387	36	116	Single Myb Histone (SMH) Gene Family	AT1G72740	38.272	1.63e-08	51.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2387	K11275		-	gmx:100500169	202.986

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