Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2387 ATGTCTGCCGCCGGAGAAGATGTTGCTCCCGCCCTCGAAAAGCCGGTGGAGGAGATGAAGGCACCAGAGGTGCCGAAGCCTGCGAAGGAGAAAAAACCTAGGGCTCCGAGAGAAAAGAAGCCCAAACAAGCCAAAACCGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGACGGCGCTGAACGAGAAGGGAGGTTCGAGCCCCTACGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGCCTGCAACTGAAGAACCAAGCCGCGAGGGGGAAACTAGTGAAGATCAGGGCTTCGTACAAGTTGTCCGAAACCgcgaagaaggagaaaaaggagAGCACGGCCAAAGCGACGAAGGCCAACGCAGAGGAAAGGGAGCCGCGCCCGAAGCGAAACAAAACCATAACCGCCGCGAGCAATAGAACCGAGACGGTTAAAAAGGCCACGAAGAAGGCTGGGCCGAAGAAGACGAAGAAAGTGTCCACGCCGCGAAGCCCAAACAGCCCAAGTCCATTAAGTCTCCGGCCAAGAGGGCCCGGAAAGCCACCGTTGCTGCGGCGTGATGCTTGA 612 0.5392 MSAAGEDVAPALEKPVEEMKAPEVPKPAKEKKPRAPREKKPKQAKTASHPPYFQMIKEALTALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIRASYKLSETAKKEKKESTAKATKANAEEREPRPKRNKTITAASNRTETVKKATKKAGPKKTKKVSTPRSPNSPSPLSLRPRGPGKPPLLRRDA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2387 203 MobiDBLite consensus disorder prediction 11 34 - -
Ssu2g2387 203 MobiDBLite consensus disorder prediction 1 52 - -
Ssu2g2387 203 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2387 203 CDD H15 46 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2387 203 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu2g2387 203 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu2g2387 203 PRINTS Histone H5 signature 163 180 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu2g2387 203 PRINTS Histone H5 signature 132 146 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu2g2387 203 PANTHER HISTONE H1 8 180 - -
Ssu2g2387 203 MobiDBLite consensus disorder prediction 115 146 - -
Ssu2g2387 203 Gene3D - 43 131 IPR036388 -
Ssu2g2387 203 PANTHER HISTONE H1 8 180 - -
Ssu2g2387 203 Pfam linker histone H1 and H5 family 49 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2387 203 MobiDBLite consensus disorder prediction 115 203 - -
Ssu2g2387 203 SUPERFAMILY "Winged helix" DNA-binding domain 45 129 IPR036390 -
Ssu2g2387 203 Coils Coil 117 137 - -
Ssu2g2387 203 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2387 Ssu-Chr2 81464132 81464843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2387 36 116 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 1.63e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2387 K11275 - gmx:100500169 202.986