Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2383 ATGGCACCAGCCCTAGTGGCTGCCGAGGGGACATTGGTGGCAACGGCTGTCGGGAGGGGCAGGATTGAGCTTCCTTTTGGTGCGAAGAAAATTGTGCCAAGTGGGTGTAGGGCAATGATTGGGCAAGTTGCGAGTGAAGGGAGAACTGAGAAGCCTCTTCCTAAGGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGGAATTGTAGGCCTAAGGTGCATGGTGTGGCTATGAACCCAATTGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGGCATGCTAGTACTGTTAGGTGTGATGCTCGTCCTGGCCAGAAGGTTGGTCTTATTGTTGTGCTAGGAAGGCTGGTCGTCTTAGGGGACAAGCTGTTACCATTGCTGCCAAAGCGGATAAGACTACTTGAGGAGATTGCTAGGGCTTTATTTGATTATAACTTCTCAACTTTTGTTTCTTTGATAGTTTATGTAAAACTATTTGAATAA 489 0.4785 MAPALVAAEGTLVATAVGRGRIELPFGAKKIVPSGCRAMIGQVASEGRTEKPLPKAGNAYHKFRVKRNCRPKVHGVAMNPIEHPHGGGNHQHIGHASTVRCDARPGQKVGLIVVLGRLVVLGDKLLPLLPKRIRLLEEIARALFDYNFSTFVSLIVYVKLFE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2383 162 Gene3D Ribosomal protein L2, domain 3 44 114 IPR014726 -
Ssu2g2383 162 SMART Ribosomal_L2_C_2 9 105 IPR022669 GO:0003735|GO:0005840|GO:0006412
Ssu2g2383 162 PANTHER RIBOSOMAL PROTEIN L2 20 113 IPR002171 GO:0003735|GO:0005840|GO:0006412
Ssu2g2383 162 PANTHER 60S RIBOSOMAL PROTEIN L8-LIKE 20 113 - -
Ssu2g2383 162 SUPERFAMILY Translation proteins SH3-like domain 11 112 IPR008991 -
Ssu2g2383 162 Pfam Ribosomal Proteins L2, C-terminal domain 10 95 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2383 Ssu-Chr2 81427052 81427816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2383 21 118 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 81.000 2.15e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2383 K02938 - ini:109147297 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2383 2 81427052 81427816 Ssu6g2055 6 39079311 39081217 PCT