Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2380 ATGTCTGCCGCCGGAGAAGATGTTGCTCCCGCCCTCGAAAAGCCGGTGGAGGAGATGAAGGCACCAGAGGTGCCGAAGCCTGCGAAGGAGAAAAAACCTAGGGCTCCGAGAGAAAAGAAGCCCAAACAAGCCAAAACCGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGACGGCGCTGAACGAGAAGGGAGGTTCGAGCCCCTACGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGCCTGCAACTGAAGAACCAAGCCGCGAGGGGGAAACTCGTGAAGATCAGGGCTTCGTACAAGTTGTCCGAAACCGCgaagaaggagaaaaggagAGCACGGCCAAAGCGACGAAGGCCAACGCAGAGGAAAGGGAGCCGCGCCCGAAGCGAAACAAAACCATAA 447 0.528 MSAAGEDVAPALEKPVEEMKAPEVPKPAKEKKPRAPREKKPKQAKTASHPPYFQMIKEALTALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIRASYKLSETAKKEKRRARPKRRRPTQRKGSRARSETKP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2380 148 MobiDBLite consensus disorder prediction 11 34 - -
Ssu2g2380 148 Gene3D - 43 128 IPR036388 -
Ssu2g2380 148 MobiDBLite consensus disorder prediction 1 52 - -
Ssu2g2380 148 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2380 148 MobiDBLite consensus disorder prediction 124 138 - -
Ssu2g2380 148 MobiDBLite consensus disorder prediction 115 148 - -
Ssu2g2380 148 CDD H15 46 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2380 148 Pfam linker histone H1 and H5 family 49 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2380 148 PANTHER HISTONE H1 8 138 - -
Ssu2g2380 148 PANTHER HISTONE H1 8 138 - -
Ssu2g2380 148 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2380 148 SUPERFAMILY "Winged helix" DNA-binding domain 45 130 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2380 Ssu-Chr2 81367789 81368335 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2380 36 116 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 6.65e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2380 K11275 - gmx:100500169 165.622