Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2379 ATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAAcagatgaagaacttgttgggTATTATCTGAGGAAGAAAGTGGCTTCTCAGAAGATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAGTGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCGGGGTTTTGGAAGGCAACAGGAAGAGACAAAGCCGTGTATGACAAGGCAAAACTAATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAAAGGACAGAAAACTGATTGGATCATGCACGAGTATAGGCTTGAATCCGATGAGAATGGACCTCCACAGGAGGAAGGATGGGTTGTATGCAGAGCCTTCAAGAAAAAAACCACTGGGCAAACGAAAACTATTGAAGGATGGGAATCAAGCTACTTCTATGACGAAGCAAGTGGGGTAAGCACCGTGGTGGATCCAATTGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTAGCTCAAAACTTCATGTGTAAGCAAGAGATAGAAGCAGATAACTTGAGTTGCATGCATCAAGACCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTAAAGAGGCCAAGCACAGTGTCCCTAGTATCAGACAATAACGAAGATGAAGACATTCAAAACAGGTtatccaacaacaacacaaaGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACAGGCATGACACTAATGGACTCTCAAGCTTTGAACCCCATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAAGTTAAGCCCGTTTCTAACTACTAGCTCAGACTGTGATATTGGGATATGCgtatttgaaaaatga 1014 0.4221 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPKGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTIEGWESSYFYDEASGVSTVVDPIDLISRQSQSFLAQNFMCKQEIEADNLSCMHQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIQNRLSNNNTKKVTDWRALDKFVASQLSQEDRHDTNGLSSFEPHDNHDMALLLLQSSRDEGNKLSPFLTTSSDCDIGICVFEK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2379 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 5 316 - -
Ssu2g2379 337 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Ssu2g2379 337 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Ssu2g2379 337 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Ssu2g2379 337 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Ssu2g2379 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2379 Ssu-Chr2 81348402 81350960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2379 2 336 NAC Transcription Factor Family AT2G18060 65.217 2.29e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu2g2379 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2379 - - pvu:PHAVU_002G110900g 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2379 2 81348402 81350960 Ssu6g2051 6 38907566 38910604 PCT