Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2378 ATGGGGGCGGCGTACGGCACTGCCAAGAGTGGAGTCGGCGTCGCGTCGATGGGTGTGATGAGACCGGAGCTCGTGATGAAATCCATTGTGCCGGTTGTGATGGCCGGAGTGTTGGGTATCTACGGCTTGATCATCGCCGTCATCATCAGCACCGGCATTAACCCTAAGGCCAAATCCTACTATCTCTTCGACGGCTACGCTCACCTCTCTTCCGGCCTCGCTTGCGGTCTCGCTGGCCTCTCCGCCGGCATGGCCATTGGCATCGTCGGCGACGCCGGTGTTAGAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTTATTCTCATCTTTGCTGAGGCATTGGCCTTGTATGGTCTCATTGTTGGCATCATCCTCTCTTCCCGCGCTGGCCAATCCAGAGCtgattag 417 0.5588 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2378 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 3 27 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu2g2378 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu2g2378 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 80 106 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu2g2378 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 130 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu2g2378 138 Pfam ATP synthase subunit C 1 49 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu2g2378 138 Pfam ATP synthase subunit C 70 128 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu2g2378 138 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 1 138 - -
Ssu2g2378 138 CDD ATP-synt_Vo_c_ATP6C_rpt2 62 129 - -
Ssu2g2378 138 Gene3D - 1 135 IPR035921 -
Ssu2g2378 138 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 138 - -
Ssu2g2378 138 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 1 94 IPR011555 GO:0033179|GO:0046961|GO:1902600
Ssu2g2378 138 SUPERFAMILY F1F0 ATP synthase subunit C 60 129 IPR035921 -
Ssu2g2378 138 CDD ATP-synt_Vo_c_ATP6C_rpt1 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2378 Ssu-Chr2 81315398 81317171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2378 1 138 Primary Pumps ATPases(2) AT4G38920 99.275 2.02e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2378 K02155 - jre:108989058 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2378 2 81315398 81317171 Ssu6g2050 6 38818235 38820122 PCT