Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2376 ATGCCCGCTCTTCTCCTCCTCGTGGTGCTGTGCGCACCGCTCTTAACGTGCGCCGATCGCAGCGCCGTAACCGTCGCCGAGATCCAAGCCTTGACGTCCTTCAAGCTCAACCTGCAGGACCCCGTCGGAGCTCTCGACGGCTGGGATCCGTCATCGCCGGTGGCGCCGTGCGACTGGCGCGGAGTCGCGTGCACCAACGACCGAGTCACGGAGCTGCGCCTGCCTCGTCTTCAACTCGGAGGCAGACTCAGTGACCGCGTTTCCGAGTTGCGCATGCTTCGCAAGATAAGCCTCCGTTCAAACTCATTCAACGGAACCATTCCTTCGTCGCTCTCCAAATGCACGCTCCTGCGGTCCCTATTCCTGCAGGAGAATTCATTCTCCGGCAACCTTCCGGCGGAGATCGCGAACCTCACCGGACTTCAGATTCTCAACGTCGCGCAGAACCACCTCTCCGGCGGCGTCCCCGGCGAGCTCCCGCTCGGCCTCAAGGTCCTCGACCTCTCGTCGAACGCCTTCTCCGGCGGGATTCCGAGCACTGTCGCGAACCTCTCTCAGCTCCAGCTCATAAACCTGTCGTACAACCAGTTCTCCGGCGAGATTCCGGCGAGCCTCGGGGAGCTTCAGCAACTGCAATACCTCTGGCTGGACCACAACCTCCTCGGAGGAACTCTCCCTTCGGCGCTCGCTAACTGCTCCGCGCTCGTGCACCTGAGCGTGGAAGGAAACGCGCTCGGCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGAGGCTTCAGGTGATGTCGCTCTCTCGGAACAACCTCACCGGCTCCGTTCCGGCTACCGTTTTCTGCAACGGTTCGGGCCACGCGCCGTCGCTGCGGAACGTCCAACTCGGATTCAACGGCTTCACGGATTTCGTGGGGCCTGAGACCACCACGTGTTTCAGCGTTCTTCAGGTTTTGGATATTCAGCACAACCGCATGCGAGGCACGTTTCCGTTGTGGTTGACCAACGTGACCACGTTGACCGTGCTTGACGTTTCGAGCAATGCACTTTCCGGCGAGGTTCCGCCGGAAATGGGGAACCTCGCCAAGTTGGAGGAGTTGAAGATGGCTAACAATTCCTTCACCGGGAACATTCCGGTGGAGCTCAAGAAATGTGGGTTCCTGAGCGTCGTTGATTTTGAAGGCAACGAGTTTGGCGGAGAAGTTCCTTCGTTTTTCGGTGATATGATTGGCCTGAAGGAGTTATCTCTTGGTGGGAATCGTTTCTCTGGTTCGGTTCCGGTGAGTTTTGGTAACCTTTCGTTTCTCGAAATATTGAGTTTGAGAGGTAATAGGTTGAATGGAAGCATGCCTGAGATGATAATGAGGTTGAATAATTTGACGACATTGGATCTTAGTGGAAACAAGTTTACGGGTCAAGTTTATGCGAGTATTGGGAATTTGAATAGGTTAATGGTTCTCAATCTGAGTGGGAATGGCTTCTCTGGAAAGATTCCTGCTAGTTTGGGGAATCTTTTCAGGCTAACTACACTTGACTTGAGCAAACAGAATCTTTCTGGAGAGTTACCTCTTGAGCTCTGGGGGTTGCCTAGTTTGCAAGTTGTTGCATTGCAGGAGAACAAGTTATCTGGGGATGTGCCTGAAGGGTTTAGCAGTTTGATGAGTTTGCAGTACGTGAACCTCAGCTCTAATGCCTTTTCTGGGCATATTCCTGAAAACTATGGCTTTCTTCGTTCCTTGCTTGTTCTTTCGTTGTCTGGTAATCACGTTACAGGAACAATCCCTTCGGAAATTGGAAACGTCTCTGGTATTGAAGTTCTTGAGCTTGGTTCAAATTCTTTATCAGGTCGCATTCCTGCTGATCTCTCTCGCCTCGCGCTTTTGCAAGTGCTTGATTTGAGTGGGAACAATTTAACTGGGGATGTGCCTGAGGAAATCTCCAAATGCTCGTCGTTGACAACTTTGCTGGTGGATCACAACCATCTTTCAGGGGCCATACCTGGGTCGTTGTCGGATCTATCAAACCTAACAATGCTGGATCTCTCTGCTAACAACTTTAGCGGGGAAATTCCGAGTAATCTTTCTGTGATCTCTGGTTTGGTGTACTTCAATGTCTCAGGAAATAACCTGGAAGGTGAGATACCACCAACGTTGGGATCCCGGTTCAGCAACCCCTCTGTGTTCGCAGATAATCAGGGTTTATGTGGGAAGCCACTGGATACGAAATGCGAAGATGTAAATGATAGGGACAGAAAGAGGTTGATTGTGCTGGTTGTTCTCATTGCTTGTGGAGCTTTTGTGCTAGTTTTATTTTGCTGCTTCTACGTTTTCAGTCTGCTGAGGTGGCGTAAAAGATTGAAAGAAGGAGTATCGggtgagaagaaaaagagtccCGCTAGAGCCAGTTCTGGAACAAGTGGAGGCCGTGGCAGCACTGACAGTGGGGGACCAAAACTAGTGATGTTCAACACCAAAATTACACTAGCGGAGACCATGGAAGCAACAAGACAATTTGACGAAGAGAATGTGCTGAGCAGAACAAGGCATGGATTAGTGTTCAAGGCCTGCTACAACGACGGAATGGTCCTTTCCATTCGCAGGCTCCCCGATGGATCATTGGATGAGAACATGTTTAGAAAAGAAGCCGAATCACTAGGCAAAGTCAAGCACCGAAATTTAACAGTTCTCAGAGGTTACTATGCTGGGCCACCTGACATGAGACTCCTAGTCTGCGATTACATGCCCAATGGAAACCTCGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGCCACGTTCTAAATTGGCCAATGCGACACCTCATTGCGCTAGGCATTGCCCGTGGTTTAGCCTTCCTACACCAATCCTCAATGGTCCATGGCGACGTCAAACCACAAAACGTCCTGTTCGATGCAGATTTCGAAGCCCATTTGTCAGATTTTGGGTTAGACAAGTTAACAACAGCCACCCCAGAAGCCTCCACTTCAACCTCCGTTGGCACGTTGGGTTACGTATCGCCAGAAGCGGTCCTAACCGGGGAAGCCACAAAGGAGAGTGACGTCTACAGCTTTGGCATTGTGTTGCTGGAGCTACTGACAGGAAAACGACCTGTCATGTTCACCCAGGACGAAGACATAGTAAAGTGGGTAAAAAAACAACTGCAGAGGGGTCAAATCACGGAGCTATTGGAACCAGGGTTGCTTGAGTTGGACCCAGAATCATCAGAGTGGGAAGAGTTCTTGCTGGGTGTAAAAGTAGGGTTGCTTTGCACAGCACCTGACCCTCTTGATCGACCAACCATGTCTGACATCGTTTTCATGCTTGAAGGTTGCCGAGTTGGTCCTGATATCCCATCCTCCGCGGATCCCACCTCTCAACCTTCTCCGGCGTAA 3384 0.5124 MPALLLLVVLCAPLLTCADRSAVTVAEIQALTSFKLNLQDPVGALDGWDPSSPVAPCDWRGVACTNDRVTELRLPRLQLGGRLSDRVSELRMLRKISLRSNSFNGTIPSSLSKCTLLRSLFLQENSFSGNLPAEIANLTGLQILNVAQNHLSGGVPGELPLGLKVLDLSSNAFSGGIPSTVANLSQLQLINLSYNQFSGEIPASLGELQQLQYLWLDHNLLGGTLPSALANCSALVHLSVEGNALGGVIPSAISALPRLQVMSLSRNNLTGSVPATVFCNGSGHAPSLRNVQLGFNGFTDFVGPETTTCFSVLQVLDIQHNRMRGTFPLWLTNVTTLTVLDVSSNALSGEVPPEMGNLAKLEELKMANNSFTGNIPVELKKCGFLSVVDFEGNEFGGEVPSFFGDMIGLKELSLGGNRFSGSVPVSFGNLSFLEILSLRGNRLNGSMPEMIMRLNNLTTLDLSGNKFTGQVYASIGNLNRLMVLNLSGNGFSGKIPASLGNLFRLTTLDLSKQNLSGELPLELWGLPSLQVVALQENKLSGDVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRSLLVLSLSGNHVTGTIPSEIGNVSGIEVLELGSNSLSGRIPADLSRLALLQVLDLSGNNLTGDVPEEISKCSSLTTLLVDHNHLSGAIPGSLSDLSNLTMLDLSANNFSGEIPSNLSVISGLVYFNVSGNNLEGEIPPTLGSRFSNPSVFADNQGLCGKPLDTKCEDVNDRDRKRLIVLVVLIACGAFVLVLFCCFYVFSLLRWRKRLKEGVSGEKKKSPARASSGTSGGRGSTDSGGPKLVMFNTKITLAETMEATRQFDEENVLSRTRHGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVCDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGDVKPQNVLFDADFEAHLSDFGLDKLTTATPEASTSTSVGTLGYVSPEAVLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2376 1127 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Ssu2g2376 1127 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Ssu2g2376 1127 Pfam Leucine rich repeat 163 221 IPR001611 GO:0005515
Ssu2g2376 1127 Pfam Leucine rich repeat 313 370 IPR001611 GO:0005515
Ssu2g2376 1127 Pfam Leucine rich repeat 576 635 IPR001611 GO:0005515
Ssu2g2376 1127 MobiDBLite consensus disorder prediction 788 815 - -
Ssu2g2376 1127 MobiDBLite consensus disorder prediction 795 809 - -
Ssu2g2376 1127 Gene3D Ribonuclease Inhibitor 25 158 IPR032675 -
Ssu2g2376 1127 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1123 - -
Ssu2g2376 1127 SMART serkin_6 835 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2376 1127 Pfam Leucine Rich Repeat 481 502 IPR001611 GO:0005515
Ssu2g2376 1127 Gene3D Ribonuclease Inhibitor 159 250 IPR032675 -
Ssu2g2376 1127 Gene3D Ribonuclease Inhibitor 352 452 IPR032675 -
Ssu2g2376 1127 Gene3D Ribonuclease Inhibitor 251 351 IPR032675 -
Ssu2g2376 1127 ProSiteProfiles Protein kinase domain profile. 835 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2376 1127 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1123 - -
Ssu2g2376 1127 SUPERFAMILY L domain-like 283 545 - -
Ssu2g2376 1127 SMART LRR_typ_2 430 453 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 622 646 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 138 162 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 526 549 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 406 429 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 256 280 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 478 502 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 90 114 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 334 358 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 670 694 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 454 477 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 208 232 IPR003591 -
Ssu2g2376 1127 SMART LRR_typ_2 574 598 IPR003591 -
Ssu2g2376 1127 Gene3D Transferase(Phosphotransferase) domain 1 911 1113 - -
Ssu2g2376 1127 SUPERFAMILY L domain-like 25 300 - -
Ssu2g2376 1127 SUPERFAMILY L domain-like 475 733 - -
Ssu2g2376 1127 Gene3D Phosphorylase Kinase; domain 1 812 910 - -
Ssu2g2376 1127 Pfam Protein kinase domain 847 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2376 1127 SUPERFAMILY Protein kinase-like (PK-like) 815 1115 IPR011009 -
Ssu2g2376 1127 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Ssu2g2376 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
Ssu2g2376 1127 Gene3D Ribonuclease Inhibitor 453 744 IPR032675 -
Ssu2g2376 1127 SMART LRR_sd22_2 454 480 - -
Ssu2g2376 1127 SMART LRR_sd22_2 160 186 - -
Ssu2g2376 1127 SMART LRR_sd22_2 208 234 - -
Ssu2g2376 1127 SMART LRR_sd22_2 670 693 - -
Ssu2g2376 1127 SMART LRR_sd22_2 334 360 - -
Ssu2g2376 1127 SMART LRR_sd22_2 622 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2376 Ssu-Chr2 81306963 81310346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2376 4 1127 Receptor kinase-like Gene Family AT4G36180 69.569 0.0 1511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Ssu2g2376 Pkinase 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2376 - - gmx:100795838 1982.61