Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2373 ATGCGAACGCTTTGTGATGCTTGTGAGAGAGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGCCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCGAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAACGCGCCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTCGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCAGGCTTCACAACCACTGGAACCAGGTGAGACTAAAAGAGGACAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAACAGAATCACAGGATGCCTCTGGTTACAACGCCAGGACCTGATGCTGATGGGCATACCAAGATGGAAACTAAACTGATTGATTTGAACATGAAGCCTAACAGAATACATGAACAAACCTCAAATAATCAGGTATTCAATAAATTCTCATAA 570 0.4491 MRTLCDACERAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENQASQPLEPGETKRGQNPLPKLKMGEKQQNHRMPLVTTPGPDADGHTKMETKLIDLNMKPNRIHEQTSNNQVFNKFS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2373 189 CDD Bbox1_BBX-like 4 47 - -
Ssu2g2373 189 MobiDBLite consensus disorder prediction 109 123 - -
Ssu2g2373 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu2g2373 189 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Ssu2g2373 189 CDD Bbox1_BBX-like 56 96 - -
Ssu2g2373 189 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Ssu2g2373 189 SMART bboxneu5 51 96 IPR000315 GO:0008270
Ssu2g2373 189 SMART bboxneu5 1 47 IPR000315 GO:0008270
Ssu2g2373 189 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Ssu2g2373 189 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Ssu2g2373 189 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Ssu2g2373 189 Gene3D Classic Zinc Finger 2 92 - -
Ssu2g2373 189 MobiDBLite consensus disorder prediction 106 158 - -
Ssu2g2373 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2373 Ssu-Chr2 81272110 81274067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2373 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.842 1.81e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Ssu2g2373 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2373 - - gmx:100780544 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2373 2 81272110 81274067 Ssu6g2047 6 38679476 38681610 PCT