Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2370 ATGGAGCAACCGCTTCAACCGCAGCCGGAGACCGCGGCGAGCGTCGCTAGGGATTTGGAGGAGTCGCGACTGGTCGGAGTCCCCGTCGCGCTCGCTCGCGATGCTGACGTGGCGGAAAGAGATGGTGGCTCTTGCGTGCCGAATTTGGATGTCACCGTCGTGGACGGCGCCGTTTTGAAACGGAAGCGCGGTCGTCCGGCCAAGGGAGCGCCGAAAGTGGCTCCTCCGGTGAGGCAGAAAAAGGACGAGGAGGACGTTTGTTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCGTATCACCCCGCGTGTATCAAGCGAGACGAAGCGTTTTTCCAATCAAAGGCTAAGTGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCATCACATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGATGCACAAAAGATGCTGATTTCGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATGTGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAACTCCTTCGAGCTAAAAACTCGTGGAAAGGTGCTGCTCCTATGAATTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAgaatcaaataatttgaaaaacaagaaGCCCAAGAGACAGCCAAAGCTTCTTGGTAAGGGTGATTGCTTGGATAATAGGATAACTTcaggtggtgacagtggtgtgTCTTTGCCTGAATGCACAAAATGGGCAACGAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATAGTGATACATCTCTCCTGTCTCAATTTGACGTCCAGACTCTCTTGCTGGAgtatgtaaagaaaaataatcttcGTGATCCTCAGCAGATGTCCCAAATTGTTTGCGACTCTAGACTATTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATCGAAATGCTAAAGCTCCTTGAATCccactttcttttaaaagacAATGACCTTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAATTGATGTTAGTTAATGATAAGAGatgtaaaacacataaaaaGGCTGATGTTTTAGTGCCACAAAGTAATCCAGATGCATATGCTGCAATAGATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGCACCTAACTGAAGATATTGAAAAGATTCATGAGAATGTTGTTGGTTCATTTGTGCGGATACGAATCTCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTATAAGCAAGGTTGCTGAGCCTTACAAAATTGGCACAAGAACAACTGATATTAagcttgaaattttaaacttaaacagGAAGGAGGTCATACCAATTGCTGAAATTTCAAATCAGGAGTTCTGCGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTGGACAAAGCATTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTCAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCACCTGAGGAACGTCAGCGCAGGCTGCATGAAATTCCGGACGTACACTCTGACCCCAATTTGGATTCAATGTTCGAgtctgatgaagatgatggagaGTCAGATGAAACGAAGCAAGATagcaatatattttcaaaatatcttgGGCTTGATAGAAGAGAGAGGGGGCCTATGTTTCCGAAAGTTTCGAATGGTGTCTCCAACGACATGGGATGCAAAACTGAAGACTTGCCCGCTACCCGTGAACCGATATGCATACAGAAGAATCATATCGACCGTGATGATACAGCTATTGATGATAGCACTAATGCTGTTGTGAAATCAGAAGTGTCTAGTGTTGCAGTGGATATTTCATCATCACTTCTCTCTACTGGGATGGAGCAGCcatttaatgattctttgaaTGATAGATTGTGGCATTATAAGGATCCAAGTGGGAAGATTCAAGGACCTTTTTCTATGTCGCAGCTGTCCAAGTggaataaaaatgaatgtttCCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAGGAAAACTCTATATTGTTAACTGATGCACCAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCACTCAACAGCCAATTGCTCTCTCTAGGGGTCAGTGTTACATTGgataataaagataatagtCAGGATGCTGGGAAGAATGCAACAAAGAATGAAATTTCTCCAGATAGACAAATTGTTGAACAGAGCAGGGAACAAAAGGTGGATAATACCTCTACCCAGTCTGATGGTAAAGATGAACCTGTTAGGAGCAATGGATGGCATGGCCAGCTACATGTAGACCCTTCAGTACTGTCAACTGCTTTTCCTGAGAAATTGAATGAGAATCCTTCTGATAAATTAAGTAAAGGTCATGGGATTGTGGGAAACTCCGAAGATAATGGAAATAATGGCTCAAACAGGACATCTGATGGGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGATAATGAAGAGACTTCAGGGCAATCTTCTGGACAGACCTGGAGACCCCCTAATGTAAGTAGTTCTTCCAATTGCTTGGTTACCACATCAGCTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCTGCATGTCATACATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCGAATTGTTTGGTTACCACATCAGCTCATGTTTCTGGTACAAAAACATCACCGCTTAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAACCATGAAATGTGGTGAGGAATTGACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTATTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCGCTGAGCTCCACAGGTGATTTAAACTTACCGTCTCAATCGACAGCAGTAGAGGAACCATTACAACAAGCAGAtgtacatcatcatcatcaaagaATTTCTGCAGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTGCAAAGAATGTTAGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACAAATTGTTCCATCCCCTGCAACCTTGGGCCTGGGTATAGACACCACTTGGAGACTTGGGTTAGAGAATACACACTTGGGATGGAGCGGAATTGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACGGCAGTGCAGGAAAACAGGAGCTCAAATTCATACACTTCTGCAGTAACTCCAGGCTTTGGGGATAGCCAAACAAGATATGGCAGTGATCGATTTTCCGTTCCCAGAGATCGGGGTTTTCAAGGTCATGGTAGCGGTAGGGAATCAGGTTTTGGTAGAAGCAGAACTGCATATAACAGGCAACCGTTATTTGGTGTTGGAAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGtgtgtaaattttatgaaagtGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 3975 0.4146 MEQPLQPQPETAASVARDLEESRLVGVPVALARDADVAERDGGSCVPNLDVTVVDGAVLKRKRGRPAKGAPKVAPPVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFQSKAKWNCGWHICSFCQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGMCMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNSWKGAAPMNYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGKGDCLDNRITSGGDSGVSLPECTKWATKELLEFVAHMKNSDTSLLSQFDVQTLLLEYVKKNNLRDPQQMSQIVCDSRLLNLFGKARVGHIEMLKLLESHFLLKDNDLNAVASEGEAIDNYNKQLMLVNDKRCKTHKKADVLVPQSNPDAYAAIDAHNINLIYLRRSLMEHLTEDIEKIHENVVGSFVRIRISSSDQKQDMYRLVQVVGISKVAEPYKIGTRTTDIKLEILNLNRKEVIPIAEISNQEFCEDECKRLRQSIKYGLSKRLTVGEILDKALTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDETKQDSNIFSKYLGLDRRERGPMFPKVSNGVSNDMGCKTEDLPATREPICIQKNHIDRDDTAIDDSTNAVVKSEVSSVAVDISSSLLSTGMEQPFNDSLNDRLWHYKDPSGKIQGPFSMSQLSKWNKNECFPPDLRIWRIDEKQENSILLTDAPSGKCSKNVSLPLNSQLLSLGVSVTLDNKDNSQDAGKNATKNEISPDRQIVEQSREQKVDNTSTQSDGKDEPVRSNGWHGQLHVDPSVLSTAFPEKLNENPSDKLSKGHGIVGNSEDNGNNGSNRTSDGQSNSGQSYQKQSDNEETSGQSSGQTWRPPNVSSSSNCLVTTSAHVSGTKTSPHKLGFDLHNPPSPPACHTSSGQTWRHPNVNSSSNCLVTTSAHVSGTKTSPLKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSTMKCGEELTEGSKNDCLSFIAELSPMLDAGKGDALSSTGDLNLPSQSTAVEEPLQQADVHHHHQRISAEHSSRSSKVEVGAKNVSVSGNQWDSGSENSQIVPSPATLGLGIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSNSYTSAVTPGFGDSQTRYGSDRFSVPRDRGFQGHGSGRESGFGRSRTAYNRQPLFGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2370 1324 SUPERFAMILY FYVE/PHD zinc finger 69 131 IPR011011 -
Ssu2g2370 1324 SMART PHD_3 86 132 IPR001965 -
Ssu2g2370 1324 Pfam Plus-3 domain 440 543 IPR004343 GO:0003677
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 907 972 - -
Ssu2g2370 1324 Coils Coil 569 589 - -
Ssu2g2370 1324 CDD GYF 742 794 IPR003169 GO:0005515
Ssu2g2370 1324 CDD PHD5_NSD 86 131 - -
Ssu2g2370 1324 Gene3D SWIB/MDM2 domain 301 392 IPR036885 -
Ssu2g2370 1324 Gene3D - 436 565 IPR036128 GO:0003677
Ssu2g2370 1324 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 997 1324 - -
Ssu2g2370 1324 SUPERFAMILY SWIB/MDM2 domain 308 384 IPR036885 -
Ssu2g2370 1324 SUPERFAMILY GYF domain 736 794 IPR035445 -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 1136 1157 - -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 821 876 - -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 821 841 - -
Ssu2g2370 1324 ProSiteProfiles Plus3 domain profile. 435 568 IPR004343 GO:0003677
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 988 1002 - -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 888 1002 - -
Ssu2g2370 1324 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 10 977 - -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 1134 1160 - -
Ssu2g2370 1324 Gene3D - 744 798 IPR035445 -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 1228 1277 - -
Ssu2g2370 1324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 175 IPR013083 -
Ssu2g2370 1324 SUPERFAMILY Plus3-like 436 564 IPR036128 GO:0003677
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 856 870 - -
Ssu2g2370 1324 ProSiteProfiles GYF domain profile. 742 796 IPR003169 GO:0005515
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 1228 1253 - -
Ssu2g2370 1324 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 10 977 - -
Ssu2g2370 1324 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Ssu2g2370 1324 SMART rtf1 435 545 IPR004343 GO:0003677
Ssu2g2370 1324 ProSiteProfiles SWIB/MDM2 domain profile. 302 385 IPR003121 -
Ssu2g2370 1324 CDD SWIB-MDM2_like 308 383 - -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 610 629 - -
Ssu2g2370 1324 Pfam GYF domain 745 785 IPR003169 GO:0005515
Ssu2g2370 1324 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Ssu2g2370 1324 ProSiteProfiles Zinc finger C3H1-type profile. 1299 1324 IPR000571 GO:0046872
Ssu2g2370 1324 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 997 1324 - -
Ssu2g2370 1324 SMART gyf_5 743 798 IPR003169 GO:0005515
Ssu2g2370 1324 Pfam SWIB/MDM2 domain 313 383 IPR003121 -
Ssu2g2370 1324 SMART swib_2 305 388 IPR019835 -
Ssu2g2370 1324 MobiDBLite consensus disorder prediction 610 648 - -
Ssu2g2370 1324 SUPERFAMILY CCCH zinc finger 1299 1323 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2370 Ssu-Chr2 81232064 81238034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2370 84 167 PHD Transcription Factor Family AT5G36670 35.632 1.93e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu2g2370 Plus-3 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2370 - - gmx:100801151 2261.11