Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2365 atggttttattattttcctgTCAGGCTGAGACAGAAATGGAGTGCGTCGTGGAGGCAGCGTTGAAGAGCAATTTTAGGAAAGAAATGGCCATAAAACTCAGCCCACAAACCTTCATGGAGGAGTTCAGTGTGCAAAACGGCACCACCTGCGATGACTTTTCCGTGGACGACCTCCTTGACTTCTCGCACGTGGAAGAAGAAccagaacaacaacaacaacaaaaggaaCAAGAACACACTGCTTGTGTCTCCTTTCAACAACAAAACCCAAGCCGCGAATCCTGTGCTTTCAAATACGATTATGCCTCTGTGCCCACTAGCGAGCTCAGCGTTCCgGCGGATGACGTGGCGGACTTGGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGGGCTTCCCCGTCGTAACGGAGAACCCGGTGGGCCTTGTGGCGAAAGAGCCAGAGCCTGAACCGGAAAGCCCGGTTTTCACTTTCAAAACCCCGGTTCAGACCAAGGCGAGAAGTAAGCGAACCAGGAACGGCGTTCGGGTTTGGCCACTCggttcttctccttctttcacCAACTCTTCCTCCTGCTCCACCACCTCCTCctcatcctcctcctcctcttcctgCCCCTCTAGCCCCTTGTTAATTTACCCCAACTTCTCCCAAAGCCTGGACCACGTTTCCTCCGAGCCCAAGCCCAAGAAACCCAAGAAAAAACCCTCTTCCGACACTGCGGTAACCCTGGCGCCGCGACGGTGCAGCCATTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCGCTCGGCCCAAAAACGCTCTGCAACGCGTGCGGGGTCCGGTTCAAGTCGGGCCGGCTCTTACCCGAATATAGGCCCGCTTGTAGCCCAACATTTTCCAGTGAATTACATTCGAACCACCACCGTAAAGTGCTCGAGATGCGGCGGAAGAAGGAGATAGTGACTGGGGTTGAGACTGGTTTATCCCCTGTTCCTGTTGTTCCcagtttttga 1017 0.4975 MVLLFSCQAETEMECVVEAALKSNFRKEMAIKLSPQTFMEEFSVQNGTTCDDFSVDDLLDFSHVEEEPEQQQQQKEQEHTACVSFQQQNPSRESCAFKYDYASVPTSELSVPADDVADLEWLSHFVEDSFSEFSAGFPVVTENPVGLVAKEPEPEPESPVFTFKTPVQTKARSKRTRNGVRVWPLGSSPSFTNSSSCSTTSSSSSSSSSCPSSPLLIYPNFSQSLDHVSSEPKPKKPKKKPSSDTAVTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIVTGVETGLSPVPVVPSF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2365 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 310 - -
Ssu2g2365 338 ProSitePatterns GATA-type zinc finger domain. 254 279 IPR000679 GO:0006355|GO:0043565
Ssu2g2365 338 ProSiteProfiles GATA-type zinc finger domain profile. 248 284 IPR000679 GO:0006355|GO:0043565
Ssu2g2365 338 Gene3D - 248 321 IPR013088 GO:0006355|GO:0008270
Ssu2g2365 338 PANTHER GATA TRANSCRIPTION FACTOR 13 323 - -
Ssu2g2365 338 SMART GATA_3 248 302 IPR000679 GO:0006355|GO:0043565
Ssu2g2365 338 Pfam GATA zinc finger 254 288 IPR000679 GO:0006355|GO:0043565
Ssu2g2365 338 MobiDBLite consensus disorder prediction 149 211 - -
Ssu2g2365 338 PIRSF Txn_fac_GATA_plant 18 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ssu2g2365 338 MobiDBLite consensus disorder prediction 225 247 - -
Ssu2g2365 338 CDD ZnF_GATA 253 301 IPR000679 GO:0006355|GO:0043565
Ssu2g2365 338 MobiDBLite consensus disorder prediction 183 211 - -
Ssu2g2365 338 PANTHER GATA TRANSCRIPTION FACTOR 13 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2365 Ssu-Chr2 81079040 81080131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2365 18 338 C2C2-Gata Transcription Factor Family AT5G66320 54.046 1.64e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu2g2365 GATA 1.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2365 - - var:108335072 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2365 2 81079040 81080131 Ssu6g2040 6 38367480 38368547 PCT