Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2363 ATGGGTCGTGGGAAAATTGAGATAAAGTTGATCGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTTTCCCTCATCATGTTCTCCAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTTACgacaaaaaaaatcattgatcaGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGAAGGATATTAACAACAAACTCAGGAGACAGATCAGGCATAGGATAGGTGACGGTTTGGATTTGGACGACCTGAGCTTCCAGCAACTGCGCACACTTGAAGAGGACATGCTTTCTTCCATAGGGAAAATACGCGAACGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTCCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAACGGCGCCTCCACCCTGTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCCACCATGGAGAGCAACCCTTTAAAACTGACGACCTGCGCCTTGCTTGA 693 0.4401 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGDGLDLDDLSFQQLRTLEEDMLSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPHHGEQPFKTDDLRLA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2363 230 Coils Coil 85 105 - -
Ssu2g2363 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Ssu2g2363 230 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g2363 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu2g2363 230 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g2363 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu2g2363 230 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 230 - -
Ssu2g2363 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Ssu2g2363 230 Gene3D - 14 104 IPR036879 GO:0003677|GO:0046983
Ssu2g2363 230 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Ssu2g2363 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Ssu2g2363 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu2g2363 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu2g2363 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu2g2363 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2363 Ssu-Chr2 81046923 81049093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2363 1 218 MADS-box Gene Family AT3G54340 50.000 2.27e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu2g2363 K-box 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2363 K09264 - gmx:100784496 417.542