Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2352 ATGATGCCTGAACGAGCTAATCTGCACATAGCCTTAACgtttttacaattttgttatgCAGGAAATCATATATTTCTGAGAATTGCACTTGATACAGGCGTAAGCAAGCTTATCTTTCCTGTCTATAGAAACATCACCGCCTTGGTTCTTCTAGGTCCCCTCGCATATTTTTCAGAGAAGAAAGACAGGCCGTCAATAACCAGTTACTGTGTGATACACTTTTTCCTACTTGGACTTGTTGGAATAACAATGAAAGAAGGATTCTACCTCTTGGGTTTGGAGAATACATCACCTACGTTTGCTGCTGCTACGCAGAATTCTGTTCCAGCCCTCACCTTTCTGATGGCAGCGCTACTCAGATATGAAAGCGTGCACTTCAATAGGATTGATGGTCAGGCTAAGGTCCTTGGGGTCCTCGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTGTCATTTATACTCCACATTTAGCATTACATCAGGAACAATACTTGTCTATTTTGGGGGATGCCACAGGAAAGAACTGGAACTTGGGTGGCATCTATCTCTTTGGTCACTCCTTATGTTGGTCTGGTTGGATAGTGATGCAAACATTTGTTCTGGAAAATTACTCAGCCCCACTCACAGTTTCTGCATTTACGTGCTTCTTTGGTGTTGTGCAGTTTTTGACAATTGCAGCCTTTTTTGAGAAGGATTCCAAAGCCTGGCAGTTCAATTCTAGTGAAGAAATCTACAGTGTTTTGTTCTCGGGATTGGTGACTTCAGGGCTGGCATCAGCAATACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTATCTACCTTTGCAAACATTACTCGTAGCTTTGATGGCATCTATTGTTTTCGGCGAAGAATTCTTCTTGGGAGGGATTATTGGAGCATTCTTAATTATATCTGGCCTATACCTTGTTGTCTGGGGAAGAAGTCAAGAAACCAAGTTTGTCAAAGAGGTCATAGTCCCCATTGAGCCCAAGAATCATTGGGAAGAAAAGAGTGACGGTTCTTCCCTCACCCAACCATTGATTCCTACACAAAGCTCTTAG 1089 0.4242 MMPERANLHIALTFLQFCYAGNHIFLRIALDTGVSKLIFPVYRNITALVLLGPLAYFSEKKDRPSITSYCVIHFFLLGLVGITMKEGFYLLGLENTSPTFAAATQNSVPALTFLMAALLRYESVHFNRIDGQAKVLGVLASVGGASIITLYKGPVIYTPHLALHQEQYLSILGDATGKNWNLGGIYLFGHSLCWSGWIVMQTFVLENYSAPLTVSAFTCFFGVVQFLTIAAFFEKDSKAWQFNSSEEIYSVLFSGLVTSGLASAIQIWTIGKGGPVLASIYLPLQTLLVALMASIVFGEEFFLGGIIGAFLIISGLYLVVWGRSQETKFVKEVIVPIEPKNHWEEKSDGSSLTQPLIPTQSS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2352 362 Pfam EamA-like transporter family 16 147 IPR000620 GO:0016020|GO:0016021
Ssu2g2352 362 Pfam EamA-like transporter family 183 320 IPR000620 GO:0016020|GO:0016021
Ssu2g2352 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 135 - -
Ssu2g2352 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 324 - -
Ssu2g2352 362 PANTHER WAT1-RELATED PROTEIN 5 332 - -
Ssu2g2352 362 PANTHER WAT1-RELATED PROTEIN 5 332 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2352 Ssu-Chr2 80918561 80920884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2352 2 357 Nodulin-like Gene Family AT1G75500 56.911 5.60e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2352 - - gmx:100790386 648.662