Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2349 ATGGCGGGTTTATTCTCACTAAGAGGGAGAGGGAACAGCGACAGCCAAGAGGAaattcctcctcctcctcctcctcctccggATAGCTTATTCTGGTATAACAAGAATGACGACGTTTCCTCTTACCGAGGTGGCAGCAGCGGGTTTGAGCTATGGAACCAGCAGCAGCTCATGGGCCAGGCTCCTCCTCAACCGCGGCCTCTCTTCCACCAAGATCTCTACTCCGCGTTAGGAGTTGGGCCCAGCAGGCCCATCTCCGATGATCAGTCGTCGTCGAGATCCGGGTTCATGTTGGGAGCAAGCGCAAGCGGAGGATCGATTAGCTGCCAGGACTGCGGGAACCAAGCGAAGAAGGATTGCCCTCACATGCGGTGCAGAACGTGCTGCAAGAGTCGCGGCTTCGATTGCCAAACCCATCTCAAAAGCACTTGGGTCCCAGCTTCCCGGCGTCGCGAAAGACAACAACAACTCGCTGccttacaacaacaacaacaacagcaagaAATTTCCGGAGACGTTCCCAAAaggcagagagagagagatcataACCCAACCTCCTCTTCCCCTCTAGCCTGCACTCGCTTGCCTTCAAACCCCTCCCCCTCAGGGTTAGAGGAGGTGAATTTCCCTGCTGTGGTGAGGTCTGCTGCGGAGTTCCGATGCGTACGTGTGAGCTCCATGGACGAGGCGGAGGAGGAGTATGCTTACTCAACCGCTGTGAACATTGGAGGGCATTTGTTCAAAGGAATTTTATATGACTATGGTCCAGAAGGTAACAGTAATTACATGGGTGCTGGAGAAAGCTCCTCCACCGGTGTTGGTGGGTTGAACCTCACTACTGGTACTGGTGCTGTTGTGTCTGGGCCACTCGTTGATCCTTCTTCTTTGTATCCAGCTCCTCTTAACACCTTCATGCCTGGTAGCGGTACGCAATTCTTCCCTCACCCACGATCTTGA 957 0.4974 MAGLFSLRGRGNSDSQEEIPPPPPPPPDSLFWYNKNDDVSSYRGGSSGFELWNQQQLMGQAPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSGFMLGASASGGSISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHLKSTWVPASRRRERQQQLAALQQQQQQQEISGDVPKRQRERDHNPTSSSPLACTRLPSNPSPSGLEEVNFPAVVRSAAEFRCVRVSSMDEAEEEYAYSTAVNIGGHLFKGILYDYGPEGNSNYMGAGESSSTGVGGLNLTTGTGAVVSGPLVDPSSLYPAPLNTFMPGSGTQFFPHPRS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2349 318 MobiDBLite consensus disorder prediction 154 171 - -
Ssu2g2349 318 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 209 256 IPR006511 -
Ssu2g2349 318 MobiDBLite consensus disorder prediction 84 99 - -
Ssu2g2349 318 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 318 - -
Ssu2g2349 318 MobiDBLite consensus disorder prediction 79 99 - -
Ssu2g2349 318 MobiDBLite consensus disorder prediction 1 47 - -
Ssu2g2349 318 MobiDBLite consensus disorder prediction 184 204 - -
Ssu2g2349 318 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 318 IPR007818 GO:0003700|GO:0006355
Ssu2g2349 318 Pfam Domain of unknown function (DUF702) 106 257 - -
Ssu2g2349 318 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Ssu2g2349 318 MobiDBLite consensus disorder prediction 147 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2349 Ssu-Chr2 80871555 80873100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2349 1 318 C2H2 Transcription Factor Family AT3G51060 44.156 1.59e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu2g2349 DUF702 4.8e-65 No_clan