Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2342 ATGAGGACTTCTTTGGGGAGTTTTTCTTCCTCCTTCACAGGCGTTCGTTCCGCCTCATCATGGTTCGAGGTGTATGCCGCCTTCTCCACATTCATGATGCTTCTAAGAACCGCAATCAACGATCTCATACCCCAACAAATTCGCTCTTTTATCGCCTCAAAGCTCAAGGCTTTCTTCTCAGACCGCCAAAACAACCATCAGGTCTCACTCCAGATCAATCAGATTTGGGAAGGCCAAACCAACCTAATCTTCCAAGCCGCCCAAGAGTACCTCCCAGCTAGAATAACCCACTCTTACAAATCCCTCAAAGTTGGCAAAGTCCCAAAGCACAAGAACATAGTAGTGGCCGTGGACGGAACCCAAGAGGTGGTGGATCAGTTTGAAGACATCAAGCTTAAGTGGAAGCTCGTCGAAAAAAGCTCCAAAAAGGATTCTGATCGCGGTCATCCCAAGTCAAACGGTTACGAGATGCATTCATTTATGCTAAGCTTTGATGAGAAGCACAGAGATGTAGTGATGAACAAGTATATTTCGCACGTTCTAAGCACTTACGAGGCCATGCAAGCAGAGCAGAGGACTATCAAGATCCATTCCCTAGGTGGTAGGTGTTGGCAGAAAAGTGACTTAACGCATCCAGCCTCGTTCCGCTCACTTGCATTGGATCCTGAGCAAAAGCAGGCCATCATCGATgatttggatcggtttttgcgGAGGAAGGAGCTGTACAAGAAGGTGGGTAAGCCTTGGAAACGTGGCTACCTCTTGTTTGGGCCTCCAGGGACAGGAAAATCTAGCCTTATTGCAGCTATGGCCAACCACTTGAAGTTTGATGTGTATGATTTGGAGCTAAGCTCTGTCTATTCTAATTCAGACCTCATGCGAGCCTTGAGGGAGACATCTAACCGTTCCATCGTCGTCATCGAAGACATAGACTGCAACAAAGAGGTCCTTGTTCGATCAACAACAAACGCTTGTTCGGATTCAGATTCAGATTTAGACTATGACCGCAAGCATGTCAAGACTAACAGGTTTACTCTGTCGGGTCTGCTTAACTACATGGATGGCTTGTGGTCAAGTGGTGGAGAGGAGCGAATTATAATCTTCACTACTAATCACAGAGAAAGAATTGACCCTGCGTTGTTGCGCCCTGGTCGTATGGACATGCACATTCACTTGTCCTTCCTCAAAGGCAAGGCATTTCGAGTCTTGGCTTCCAATTATTTGGGTATTGAAGGACATCATCGACTCTTTGAACAAATTGAGGGTCTATTGGAGAAAATACAAGTCACCCCTGCTGTGGTAGCAGAGCAACTAATGAGAAATGAGGATCCCGACGTTGCTTTGGAAGCACTTGTTAAATTTCTCAAAGAAATGAACAAGGAAAGCCCACTTAACCTTTTTTCGTCTTTTACATCAGCTTCATCATGGTTCGAGGTGTACGCTGCCTTCTCCACATTCATGATGCTCCTCAGAACAGCCATCAATGATCTCATACCCCAACAACTGAGATCCTTCATTACCTCAAGGCTAGAGACTTTCTTCTCCAAATACCAAGCAAATAACCATATCTCTCTCCAAATTAACCAGTTTTGGGATGAAGCTACTGGAGTCCGCAATCAACTTTTCGATGCTGCCCAGGACTACCTCCCCACCAGAATTACCCGCACCTACAAATCGCTCAAAGTTGGCAAACTACATTACCAGAAACACCTTGAGCTCGCAGTGGATGCAAGTCAAGATGTGGTGGATGAATTTGAAGGCGCCAAATTCACTTGGAAGCTGAATGAGGGTTCCGAGCAGGACTCTAATAATTACAAGAAGCGTAGCTTTTTATTAACCTTCAATGATAAACATAGAGAGAGTGTATTGGATTGGTATATACCACATGTGCTTAAAACATATGAGGCCATGAAAGCTGAGAAGAGGGTTGTGAAAATCTATTCCAGGTTAGATGACTACTGGAACGAAAGTGAGTTATCACATCCTGCCACATTTGACTCACTAGCCTTGAGTCCTGAGTTGAAACAAGCTATCATTGATGATTTAGATCGGTTCCTGAGGAGGAAGGAACTTTACAAGAAAGTGGGGAAGCCTTGGAAACGTGGCTACTTGTTGTATGGACCCCCCGGAACTGGAAAATCTAGCCTCATCGCAGCTATTGCCAACTACTTgaaatttgatgtgtatgatttGGAGCTTACTTCAGTTTATTCTAATTCAGACCTCATGCGATCCATGAAGGAAGCATCTAACCGTTCCATCATTGTGATTGAAGACATAGACTGCAACAAAGAGGTGTATGCCCGATCAAATGCAAATGGTCTTTCAGATGATCAAGATTCAGACTCTGACAATGAGGGTGCCAATAAGGCATTTCAAGTCTTAGCTTCCAATTATTTGGGGATTGAAGGACAGCATCCACTCTTTGAACAAATTGAGGGTCTGTTGGAGAAAATAGAAGTCACCCCTGCAGTGGTAGCAGAGCAACTGATGAGAAACGAGCATCCTGACGTTGCTTTGGAAGCACTTGTTAAATTTCTCGAAGAAATGGACAAGGACAGTAATTGCGACTTAGAGTTAACAGGGATGTTTTCAGAGAGTAATTGA 2607 0.4392 MRTSLGSFSSSFTGVRSASSWFEVYAAFSTFMMLLRTAINDLIPQQIRSFIASKLKAFFSDRQNNHQVSLQINQIWEGQTNLIFQAAQEYLPARITHSYKSLKVGKVPKHKNIVVAVDGTQEVVDQFEDIKLKWKLVEKSSKKDSDRGHPKSNGYEMHSFMLSFDEKHRDVVMNKYISHVLSTYEAMQAEQRTIKIHSLGGRCWQKSDLTHPASFRSLALDPEQKQAIIDDLDRFLRRKELYKKVGKPWKRGYLLFGPPGTGKSSLIAAMANHLKFDVYDLELSSVYSNSDLMRALRETSNRSIVVIEDIDCNKEVLVRSTTNACSDSDSDLDYDRKHVKTNRFTLSGLLNYMDGLWSSGGEERIIIFTTNHRERIDPALLRPGRMDMHIHLSFLKGKAFRVLASNYLGIEGHHRLFEQIEGLLEKIQVTPAVVAEQLMRNEDPDVALEALVKFLKEMNKESPLNLFSSFTSASSWFEVYAAFSTFMMLLRTAINDLIPQQLRSFITSRLETFFSKYQANNHISLQINQFWDEATGVRNQLFDAAQDYLPTRITRTYKSLKVGKLHYQKHLELAVDASQDVVDEFEGAKFTWKLNEGSEQDSNNYKKRSFLLTFNDKHRESVLDWYIPHVLKTYEAMKAEKRVVKIYSRLDDYWNESELSHPATFDSLALSPELKQAIIDDLDRFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANYLKFDVYDLELTSVYSNSDLMRSMKEASNRSIIVIEDIDCNKEVYARSNANGLSDDQDSDSDNEGANKAFQVLASNYLGIEGQHPLFEQIEGLLEKIEVTPAVVAEQLMRNEHPDVALEALVKFLEEMDKDSNCDLELTGMFSESN 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2342 868 CDD AAA 688 799 - -
Ssu2g2342 868 Gene3D - 664 762 IPR027417 -
Ssu2g2342 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 443 IPR027417 -
Ssu2g2342 868 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 790 855 - -
Ssu2g2342 868 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 14 463 - -
Ssu2g2342 868 Pfam Domain associated at C-terminal with AAA 498 594 IPR025753 -
Ssu2g2342 868 Pfam Domain associated at C-terminal with AAA 43 137 IPR025753 -
Ssu2g2342 868 SMART AAA_5 699 820 IPR003593 -
Ssu2g2342 868 SMART AAA_5 249 396 IPR003593 -
Ssu2g2342 868 Pfam ATPase family associated with various cellular activities (AAA) 704 762 IPR003959 GO:0005524|GO:0016887
Ssu2g2342 868 Pfam ATPase family associated with various cellular activities (AAA) 254 392 IPR003959 GO:0005524|GO:0016887
Ssu2g2342 868 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Ssu2g2342 868 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 469 787 - -
Ssu2g2342 868 PANTHER BCS1 AAA-TYPE ATPASE 469 787 - -
Ssu2g2342 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 831 IPR027417 -
Ssu2g2342 868 CDD AAA 238 393 - -
Ssu2g2342 868 Gene3D - 205 390 IPR027417 -
Ssu2g2342 868 Gene3D - 792 850 - -
Ssu2g2342 868 Gene3D - 391 459 - -
Ssu2g2342 868 PANTHER BCS1 AAA-TYPE ATPASE 790 855 - -
Ssu2g2342 868 PANTHER BCS1 AAA-TYPE ATPASE 14 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2342 Ssu-Chr2 80767640 80787709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2342 251 392 Calmodulin-binding Proteins AT3G56690 33.333 4.83e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2342 - K08900 gmx:100787726 744.962