Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2341 ATGGGATCATACACACAGAACCTTTTTTCGTCTTTTACATCAGCTTCATCATGGTTCGAGGTGTACGCCGCCTTCTCCACATTCATGATGCTCCTCAGAACAGCCATCAATGATCTCATACCCCAACAATTGAGATCCTTCATCGCCTCAAAGCTAGAGGCCTTCTTCAATAGCCCACCAAATGACCACATATCTCTCAGAATTAACCAATTTTGGGATGAAAATTCAGGACACGGCAATCAACTTTTCGATGCTGCCCAGGAGTACCTCCCCACTAGAATTACCCGCACCTACAAATCGCTCAAAGTTGGCAAACTAGAGAATCAAAAACACCTTGATCTCGCAGTGGATGCAAGTGAAGAGGTGGTGGATGAATTTGAAGGCACCAAGTTCACTTGGAAGCTGAATGAGGGTTCCGAGAATGACTCTAATAATTTCAGGAAGCAGCATACCTTTGTATTAACCTTCAATGAGAAGAATAGGGAGAGAGTATTGGATCGATATATACCACACGTGCTTAAAACATATGAGGCCATGAAAGCTAAGAAGAGGATTGTGAAAATCTATTCCTGGTTAAATCACTACTGGAACGAAGGTGAGTTATCACATCCTGCCACATTTGACACGCTGGCCCTGAATCCTGAGTTGAAGCAAGCTATCATTGATGATTTAGATCGGTTCCTGAGGAGGAAGGAACTTTACAAGAAAGTGGGGAAGCCTTGGAAACGTGGCTACTTGTTGTATGGACCCCCTGGAACTGGAAAATCTAGCCTCGTTGCAGCTATTGCCGACTACTTGAAATTCGATGTGTACGATTTGGAGCTCTCTTCTATTTATTCTGACTCAGAACTCATGCGATCCATGAGGGATGCATCTAACCGTTCCATCATTGTGATTGAAGATGTAGACTGCAACCAAGAGGTGCATGTGCGATCAAAGTTTGATCGTCATACTGGATCAGATTCAGACTATGACAACGACGAGGGTGCCGAGGTTACTGGGAAGTTTAGTCTGTCGAGTTTGCTTAACTACATGGATGGTTTGAGGTCAAGCGGTGGAGAAGAGCGGATTATAATCTTCACTACTAACCACAGAGAAAAAATAGACCCAGCGTTGCTGCGCCCAGGTCGTATGGACATGCACATTCACTTGTCCTTCCTCAAAGGCAAGGCATTTCGAGTCTTAGCTTCCAATTATTTGGGCATTGAAGGACATCATCCACTCTTTGAAGAAATAGAAGGATTATTGGAGAAAACAGAAGTCACCCCAGCAGTTGTAGCAGAGCATCTAATCAGAAATGAGGATCCTAACCTTGCTTTAGAAACACTTGTTGAATTTCTCAAAGAAACTGGCAAGGACGGTCAAGTAGAATACCAGCTGAGTGGTGGACAATTCAATATCCTAGGAGATTGA 1413 0.4374 MGSYTQNLFSSFTSASSWFEVYAAFSTFMMLLRTAINDLIPQQLRSFIASKLEAFFNSPPNDHISLRINQFWDENSGHGNQLFDAAQEYLPTRITRTYKSLKVGKLENQKHLDLAVDASEEVVDEFEGTKFTWKLNEGSENDSNNFRKQHTFVLTFNEKNRERVLDRYIPHVLKTYEAMKAKKRIVKIYSWLNHYWNEGELSHPATFDTLALNPELKQAIIDDLDRFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLVAAIADYLKFDVYDLELSSIYSDSELMRSMRDASNRSIIVIEDVDCNQEVHVRSKFDRHTGSDSDYDNDEGAEVTGKFSLSSLLNYMDGLRSSGGEERIIIFTTNHREKIDPALLRPGRMDMHIHLSFLKGKAFRVLASNYLGIEGHHPLFEEIEGLLEKTEVTPAVVAEHLIRNEDPNLALETLVEFLKETGKDGQVEYQLSGGQFNILGD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2341 470 SMART AAA_5 241 388 IPR003593 -
Ssu2g2341 470 Pfam ATPase family associated with various cellular activities (AAA) 246 384 IPR003959 GO:0005524|GO:0016887
Ssu2g2341 470 PANTHER BCS1 AAA-TYPE ATPASE 11 455 - -
Ssu2g2341 470 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 455 - -
Ssu2g2341 470 Pfam Domain associated at C-terminal with AAA 40 135 IPR025753 -
Ssu2g2341 470 Gene3D - 383 450 - -
Ssu2g2341 470 Gene3D - 199 382 IPR027417 -
Ssu2g2341 470 CDD AAA 230 385 - -
Ssu2g2341 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 435 IPR027417 -
Ssu2g2341 470 ProSitePatterns AAA-protein family signature. 356 374 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2341 Ssu-Chr2 80752246 80753745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2341 243 384 Calmodulin-binding Proteins AT3G56690 32.667 1.26e-12 68.6