Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2340 ATGTTTTCCCCAAGAGACATGCCTTCCCCATCTTCAATCTTTTCGGCCTACGCCTCCATGACTGCCTCTGTCATGCTTCTCCGTTCCATGGCCAACGAGATCATACCCCAACCCATTCGTGGCTACCTTTTCAACGCCTTCCGCTACCTCATCAAGCCTCGCTCCCCTGCCCTCACCCTCGTCATCGAAGAGTCCACCGGCATAGCCCGCAACCAAGTCTACGACGCCGCAGAGGTCTACCTTTCCACCCGAGTCAGCCCGGACAACGAGAGGCTCAAGATCACCAAGAGCCCCAAGGAGAAAAAACTAACCATTCGCCTCGAGAAGGGTGAGAAGGTAGTTGACTGCTTCAACGGGGCGTGCTTCAAATGGAGATTCATCTGCGCGGAATCGGAAAAGAACAACCCCAACGACCACAACAGCAACATCTCCGTGAGGTCCGAAAAGCGGTCCTTCGAACTGAGCTTCCCCAAGAAGCTCAAGGAAATGGTCCTGGACTCCTACCTGCCCTTCATTCTCGACAAGGCCAAGGAGATGAAAGACGAGGAACGCGTTCTGAAGATGCATACTCTGAATACTTCCTATTGTTATGTCGGGGTGAAATGGGACTCCATAAATCTGGAGCATCCCTCCACTTTTGAGACTCTGGCTATGGAGCCAGAACTGAAGAATGCTGTGATAGAGGACCTGGATAGGTTTGTGAAGAGGAAGGACTTTTACAAGAGGGTTGGGAGGGCGTGGAAACGTGGGTACCTGTTGTATGGTCCTCCCGGTACCGGAAAATCCAGCTTGATCGCTGCCATGGCTAATTACTTGAAGTTTGACATCTTTGACCTGCAACTTGGCAACATAGTAAGGGATTCTGACCTCAGAAAGCTGCTTTTGGCTACCGCTAATAGGTCCATTTTGGTCATTGAAGACATTGATTGCAGTGTCGATCTGCCACAGCGTCGGCATGGAGAGGGACGTAAACAAGCTGACGTACAGGCTGACAGTGCATCTGATGGATGGGTGCAGTTGACTTTGTCTGGATTACTGAACTTCATAGATGGGCTATGGTCCAGTTGTGGAGACGAGAGAATCATCATATTCACCACCAACCACAAGGAAAGGCTAGACCCAGCACTGTTGAGGCCCGGAAGAATGGACATGCACATTCACATGTCCTATTGCTCCTACCAAGGCTTCAAGCTTTTGGCCTCAAACTATTTAGAAACTTCCTCTGACCACCACCACCTCTTCGGGGAGATAGAGGGGCTAATAGAGGACATTCAGATCACCCCTGCGCAAGTGGCAGAGGAATTGATGAAGAACGAAGACGCTGAGGCCACGCTTGAAGGATTCGTGAAGCTACTTAAGCGGAAGAAGATGGAAGGTGATGTATGTGAGAACTATAGTCCTGACAAAGTAGAACCTCCTCATCAGCAATCTAAAAGGCGCAAGGTTGGTGGTTGCAAGCAAAAGCGAGGTGTTGGGATTAGCAAGAACAATAGTGCTGTCACCCAAAGAAAGACAAGAAGAATTAGAACAGGGTGTAGTTTGTAA 1545 0.4984 MFSPRDMPSPSSIFSAYASMTASVMLLRSMANEIIPQPIRGYLFNAFRYLIKPRSPALTLVIEESTGIARNQVYDAAEVYLSTRVSPDNERLKITKSPKEKKLTIRLEKGEKVVDCFNGACFKWRFICAESEKNNPNDHNSNISVRSEKRSFELSFPKKLKEMVLDSYLPFILDKAKEMKDEERVLKMHTLNTSYCYVGVKWDSINLEHPSTFETLAMEPELKNAVIEDLDRFVKRKDFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLPQRRHGEGRKQADVQADSASDGWVQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKLLASNYLETSSDHHHLFGEIEGLIEDIQITPAQVAEELMKNEDAEATLEGFVKLLKRKKMEGDVCENYSPDKVEPPHQQSKRRKVGGCKQKRGVGISKNNSAVTQRKTRRIRTGCSL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2340 514 CDD AAA 248 390 - -
Ssu2g2340 514 MobiDBLite consensus disorder prediction 495 514 - -
Ssu2g2340 514 SMART AAA_5 247 392 IPR003593 -
Ssu2g2340 514 PANTHER BCS1 AAA-TYPE ATPASE 6 471 - -
Ssu2g2340 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 441 IPR027417 -
Ssu2g2340 514 Gene3D - 387 459 - -
Ssu2g2340 514 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Ssu2g2340 514 Pfam ATPase family associated with various cellular activities (AAA) 252 389 IPR003959 GO:0005524|GO:0016887
Ssu2g2340 514 MobiDBLite consensus disorder prediction 463 478 - -
Ssu2g2340 514 Gene3D - 200 386 IPR027417 -
Ssu2g2340 514 MobiDBLite consensus disorder prediction 463 488 - -
Ssu2g2340 514 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Ssu2g2340 514 PANTHER BNAA10G17020D PROTEIN 6 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2340 Ssu-Chr2 80732659 80736493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2340 207 388 Calmodulin-binding Proteins AT3G56690 30.366 3.01e-11 64.3