Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2330 ATGGATCAGTCACCACCGAATAATAACCGATTTCCTCAGACTCCAAACTCCACCAAGAAGGGACGGAGTGGTTATGAGCCATCAGACACAGAGACAGAATGGCAAGAGATTCCACGGCACGAACGAGAAAGAAGGAACTTCACTTTAAGACCCGAAGAAACAAAAGCTCTGACTCTAAGGAACAAAAACCCCATGGCACTACACAGGAGGAACCATGAAGTCTCAACAGCTTCAGTTCCACGAAGAAGACACCATAGCAAATCACCCTATAAGCTGCGCGTGGAAGGAGATGACGCTGCATCATCATCACCCATAACAGGTTTGAATACACGTAGAAACATCAGTCCCTTACTGAGACCTGACCTTGGAAGAACCGTGTCTCCCTTCAGCGGAAAAGTTGGTTCGGGGCTTCTAGAAGTGACTGAGAAGCCACACTTAAGGAGAGCAGTGACTGCTCCGAGATTGAGGGTGCAAGAGAGCAGCCATGGAGGGAGAAACAAAGACGCGGTTCCGACACAAAGAGAAGCTTCTCCTTCGGTTGGAGAAATCAACGAGATGATAGCACAGGTGAAGCTATCTAAAAACCCCACTAGTGATTATTCATCGGTGCTAGAAAGTACTGATTCCATTCAACCGGGTGACCTTTTCTTCTCTCGTGAATGCAATGCCTTGCAAGGGAAGAATTCTTCGTTGCCGAAACGCATCCAACAGTGTGAGTATTTCAGTCCAAGGCCAACGGTGGACACCGCGAGAACCTTATCTGAAAGCAAAGGAAATGGTGAGCTTAACCTcaatatgaatatgaatatcTTGTCTCGATCAACCACGGGTTTAAGTTCTGCTGCTACGAGTAGAAAGGGCAGTGGCACTGGGAAGCCAAGTAGTGTGACAAGTGAGGGTAGTGGAAAGACAAGTGCAAGCATGAGGAAGTTCACATCCAACCGAAAAAAGAACCAGAAAGACGCATGGTTTGCTTGCATGAGAACAGGTAACTGTAGAACCGCGAGAAAATCGCCTGAACGTCGACCTATTGACGAATCTTCTTTCATTGAGAGGGCATTGGTGGTGGAAAGCCTCCCACAATTCTGGGCAGATAAACACCAACCTGCTTCACTTAATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAATTGGTGTCTCAGGGTGCTTGTCCTCATATTTTGCTTCAGGGCTCTGGCTCCGGGAAAAGAGAACTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTGTAATGTATGTTTCTTCCCAATAATTTTccttccaattttttttGACCAAAGGCTTAAGAAAGTATCTGTTCCAATAACATCCAGTTCTCATCACATGGAACTCGATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGattaatcaaagaaattaacaatatatatgcGATTGCCCCCGAAGTAAGCAACATTAATTTGAAGTCAGATTATAAAGTAATAGTTCTTTATGAGGTCCACAAAGCAGTGGATAACATCCAGCACATTATCAAATGGATCATAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATTATTGAACCTGTGAAAAACCGGTTCAAAGTTATCAAAGTTGATGCTCCTCAAACTCATgaaATTGTTGAGGTTCTTATTCAGATAGCAAAGAATGAGGAAATTGATCTATCCATGAATTTTGCTGAAAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATAATGGCTCTTGAAGCATGCAAAGCACACAAGTTACTCTCAATACGAGGGAAATTTCAAATACTTCTCTTGGATTTTGTCCACCCGAAATTGATTCTCCAGCAGAAACTCGTGGAACAGCTCCTAAAAAGAATTGTGGCCGGCTTAAAAAGGGAGCTTTACTACTGGCATGCTTATTATGACAGAAGACTCCCACCAGGAATAACAGCTTTACTAAAGTTAGAAGAATTTGTGGCCAAGTTCATGAGCATGTGCAGAAAAAGCTCTGGCAGTCGGCAACATGTGTAG 2064 0.4225 MDQSPPNNNRFPQTPNSTKKGRSGYEPSDTETEWQEIPRHERERRNFTLRPEETKALTLRNKNPMALHRRNHEVSTASVPRRRHHSKSPYKLRVEGDDAASSSPITGLNTRRNISPLLRPDLGRTVSPFSGKVGSGLLEVTEKPHLRRAVTAPRLRVQESSHGGRNKDAVPTQREASPSVGEINEMIAQVKLSKNPTSDYSSVLESTDSIQPGDLFFSRECNALQGKNSSLPKRIQQCEYFSPRPTVDTARTLSESKGNGELNLNMNMNILSRSTTGLSSAATSRKGSGTGKPSSVTSEGSGKTSASMRKFTSNRKKNQKDAWFACMRTGNCRTARKSPERRPIDESSFIERALVVESLPQFWADKHQPASLNGFICNKQEAQLLKELVSQGACPHILLQGSGSGKRELAMALLREIYGDACCNVCFFPIIFLPIFFDQRLKKVSVPITSSSHHMELDVNSEPNAKYALMGLIKEINNIYAIAPEVSNINLKSDYKVIVLYEVHKAVDNIQHIIKWIIDRYSDICKLVLCCEDDADIIEPVKNRFKVIKVDAPQTHEIVEVLIQIAKNEEIDLSMNFAEKIATKSKQNLRKAIMALEACKAHKLLSIRGKFQILLLDFVHPKLILQQKLVEQLLKRIVAGLKRELYYWHAYYDRRLPPGITALLKLEEFVAKFMSMCRKSSGSRQHV 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2330 687 Gene3D - 584 677 - -
Ssu2g2330 687 MobiDBLite consensus disorder prediction 276 316 - -
Ssu2g2330 687 MobiDBLite consensus disorder prediction 24 57 - -
Ssu2g2330 687 Gene3D - 361 553 IPR027417 -
Ssu2g2330 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 607 IPR027417 -
Ssu2g2330 687 MobiDBLite consensus disorder prediction 1 23 - -
Ssu2g2330 687 PANTHER OS02G0704966 PROTEIN 174 685 - -
Ssu2g2330 687 MobiDBLite consensus disorder prediction 1 88 - -
Ssu2g2330 687 MobiDBLite consensus disorder prediction 276 312 - -
Ssu2g2330 687 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 174 685 - -
Ssu2g2330 687 SUPERFAMILY post-AAA+ oligomerization domain-like 596 676 IPR008921 GO:0003677|GO:0006260
Ssu2g2330 687 MobiDBLite consensus disorder prediction 156 179 - -
Ssu2g2330 687 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2330 Ssu-Chr2 80536969 80540854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2330 362 676 Core DNA Replication Machinery Family AT5G27740 34.659 3.55e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2330 K10756 - gmx:100795321 1083.17