Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2318 atgaATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTGAAGAAACAGGCTCAGAAGGACCTTGAAGATGATCTTGACATTGAGGCAGGGAAACTCAACCCCACGGAAGACCGTAACCTCTCTCAGTTCTTCCAAGAAATTGAAGCAATCAAGGTTGAAATGGAAGAGATTGCCAATCTCTTATTTGATCTCCAGCAACTGAATGAAGAGACAAAGTGCACCCACAGTGCCAAAGTTCTTCGCGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATCATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAGCCAATCGCACTTTATCAGAATCCTACAAAGAGGGGAGCCCCATTGATAGGACCAGAATGTCTGTGACAAATGGTTTGAGGTTCAAGCTTAGGGACATGATGAATGACTTTCAGTCCTTGAGAGACAAGATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTACACAGCAACGGGTGAGGTTCCCACTGAGGAGGTCATGGAGAAGATGGTTTCAGGGAGTCTTAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCTGATTTGGGCACTCAGGTTAGGCACGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTCGAGACCCAAGGAGAAAAAGTGGATAACATTGAGGATAATGTGGCCAGTGCGGGTAACTTCATCCACGGTGGAACCAATAGTCTTTACTATGCCAAccagatgaagaagaagaacagaAAATGGGTCTTTTGGGTTTTTGCTGTGGGGCTGATTATACTGCTCGTGTGCATCGTTGCAATGTTGTCTTCTTGA 897 0.4415 MNDLMTKSFLSYVELKKQAQKDLEDDLDIEAGKLNPTEDRNLSQFFQEIEAIKVEMEEIANLLFDLQQLNEETKCTHSAKVLRGLRDRMESDMVAVLRKARIIKAMLEVLDQSNIANRTLSESYKEGSPIDRTRMSVTNGLRFKLRDMMNDFQSLRDKILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDADLGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVASAGNFIHGGTNSLYYANQMKKKNRKWVFWVFAVGLIILLVCIVAMLSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2318 298 Gene3D - 37 168 - -
Ssu2g2318 298 Gene3D - 201 297 - -
Ssu2g2318 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Ssu2g2318 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Ssu2g2318 298 SMART tSNARE_6 199 266 IPR000727 -
Ssu2g2318 298 Coils Coil 52 72 - -
Ssu2g2318 298 CDD SynN 42 192 IPR006011 GO:0016020
Ssu2g2318 298 CDD SNARE_syntaxin1-like 208 263 - -
Ssu2g2318 298 PANTHER SYNTAXIN-112 3 294 - -
Ssu2g2318 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Ssu2g2318 298 Pfam SNARE domain 240 290 IPR000727 -
Ssu2g2318 298 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Ssu2g2318 298 PANTHER SYNTAXIN 3 294 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2318 Ssu-Chr2 80293911 80294807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2318 1 298 SNARE and Associated Proteins AT2G18260 61.238 2.26e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2318 K08486 - gmx:112997615 549.28