Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2313 ATGTCGTTGAAAAGCATTGTAAGAGAACTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGCGGAGAGCAGGCGTTGGAACAGTCGGACAAAGTCACATGTTGCTCCTGATGTCACTCTAACTTCGATTGAACCTATTCAGCAAGGGCAGTGGGCGAATTTGCCGCCTGAATTGCTTTTGGACATAATAAGGAGGGTGGAAGAGAGTGAGACTACCTGGCCTGCacgtgttgttgttgtttgttgtggTTCGGTTTGTAAATCGTGGAGGGACGTTACAAAAGAGATTATTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCTATTTCGTTGAAGCAGCCCGGTCCTCGCGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTGTACATTGGTCTGGTGCCATCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCCAAAAAGATAAGAAGGGCAACAGGCACAGACTTCGTCATATCTTTGGTTGCAAATGATTTTTCTCGGTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCCCCACATGGAGCTGGAATTCAACCAGATAGTCGGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCGAGAGGACCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCCATGCTCCAACTCCTACTTCTTTTCCTCAAATCGTTGACGAGCCTTTTTCTCCCTCACCAGTACTAAAAGGAAAAGGTCCAATTCTAGATTTAAACAATGCAAGCCTCCCAGAGTTACCAGTACAGAGCCAAGGCTCGGCTGAGCCTCTGGTACTTAAAAACAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGCGTTACAGTGGCTTCTGttaaaaactttcaacttgTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCTGAGCAAGAAAAGGCAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGCTTGagcagctttgataccaaaccAGCCTGTGAATGA 1245 0.4329 MSLKSIVRELKEMRDGIGSMSRRGAESRRWNSRTKSHVAPDVTLTSIEPIQQGQWANLPPELLLDIIRRVEESETTWPARVVVVCCGSVCKSWRDVTKEIIKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKIRRATGTDFVISLVANDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAGIQPDSRSSRRFHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGHAPTPTSFPQIVDEPFSPSPVLKGKGPILDLNNASLPELPVQSQGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKAILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2313 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Ssu2g2313 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
Ssu2g2313 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Ssu2g2313 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Ssu2g2313 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Ssu2g2313 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Ssu2g2313 414 Pfam Tub family 116 409 IPR000007 -
Ssu2g2313 414 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Ssu2g2313 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Ssu2g2313 414 PANTHER TUBBY-RELATED 1 414 - -
Ssu2g2313 414 Gene3D - 48 102 - -
Ssu2g2313 414 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2313 Ssu-Chr2 80243730 80245541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2313 1 414 TUB Transcription Factor Family AT2G18280 63.855 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu2g2313 Tub 8.5e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2313 K19600 - gmx:100798958 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2313 2 80243730 80245541 Ssu6g2003 6 36733707 36735605 PCT