Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2312 ATGAGAACTGATATTGTTGAAGGGGAGGCGTTACAAAATCCCCACTCCTTTAAgGTGCATAGTAAAATGTGCATAGAACTCACGAAATTAGTGGATAGAATCTCAATAATATTTCCAGACATAGAGGCGGCACGGCCACGATGCTCGTCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATTGATAAAGCCAAACTACTCCTGCAACATTGCTCCGAATGCAGCAAACTCTACCTGGCTATGACAGGGGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAGGATATGATTCCCGTTATGTTGGCTGTAAAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGACATTTGTTCTGGACCCTGATGAAGAAGCGGCTGGGAGTGTTGTGAGAGAGTTGCTTACTTCAACCTCAGATTCAGTTGATGATTCTGAAGTTAGAGCTCTTCAGTTTGCAGCATCTCGTCTGAATGTAACATCCCCAAGGGCCATCTTGATAGAACAACGATCTATTAAGAAGTTGCTAGATAAAATTGGACCAAATGACCTGACAAAGAAGAAGATACTGAGATACCTTCTGCATCTACTGAAAAAGCATGGAAACCTCATGGTGGGAGAACATGTGGAGCAGGTCTATTCTCGTTCTGAAGAACAAGTTGCAACAGAGAACTCTAGTCACGATTCTGTAAGAAGCCATCATGTTGAGTCAGACCCAAGCTTGAACTATGGTCAGTATAGAACTCACACTGGTGAGTTGGGTGGAGTTGCACCCCCTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTCATCATCGATTCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATGTGCcccaaaacaagaaagaaactAGTCCATACGGCATTAACTCCAAACACGGTCATGAAGGACTTAATATCAAAGTGGTGCAAAAATAATGGAGTCTCCATTCCAGATCCTAGTAGGCAAGCACAAGATATTCGCTCATGGGAAGCTTCAAACACTTCCATAAATAGTTTAGGAAGTTATTTCAATGATTTCAACTCGCCAGTGGATCTTAGTAACATGTCACTTGGGTCATTGGATACTAGTTTTAATTCAGATGCCTCGCAAGGTAAGACCACTCGTAGCTCAAATTTGGTGTTGATCAAGACCCGTGACAATTCTCAAAAGCATCAAGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATCTGAAAGATCATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGACTTTCATTGAACCACTCCTCAGATTTCTGAGCAATGCATATGATTTGCATGATGTTGAAGCGCTGAGAACTGGAATTCAACTTCTGTTGGAATTTGTGAACAACTGCAGAAATGGTAAGACTAATTTGAATGAAGATACGTTCATTATGTTGGCAATTTTTCTTGATTCAGAAGTGATAGGAGAAACTCTTGCCATAATGGAGGAACTGTCAGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCACTTCTATTTTAAACATACTTGATTCCGAGAACAAAGGTTTCCAACAACAAGCTATTAGAATACTGTACAATTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGatactgtatatatatattgaaaaatcttTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGCAATAATGAGGAACAAGAACATGCACTGGCTGTTCTAGTCTCGTTATGCTCTCGACACCCGGATTATTGTAAGTTGGTAATGCATGAGGATATCATAACTCCTCTTTTCTATATCTCCCAGAATGGAAATGATAAAGGAAAGGAAAGTGCGTTGGAATTGCTCCATCTTTTGAGAGATGTTAACTATGTTGAGAATGAAGCTTGCCCTGAACCAAATATCAACAACTCTTCTCGAGGTTCTAACAGTCACCCTgaagaaaataaatcatcaaagagGTCGACATTTCTGAAGAAACTATCACTGTTCTCAAAGTCTAGTTCACATGCATCAAAAGCCAAAAGATGA 2277 0.3917 MRTDIVEGEALQNPHSFKVHSKMCIELTKLVDRISIIFPDIEAARPRCSSGIESLCLLNNAIDKAKLLLQHCSECSKLYLAMTGDTVLSRCLKATRSLEKSLIQIQDMIPVMLAVKVSRIIHDLECTTFVLDPDEEAAGSVVRELLTSTSDSVDDSEVRALQFAASRLNVTSPRAILIEQRSIKKLLDKIGPNDLTKKKILRYLLHLLKKHGNLMVGEHVEQVYSRSEEQVATENSSHDSVRSHHVESDPSLNYGQYRTHTGELGGVAPPEEYKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDMCPKTRKKLVHTALTPNTVMKDLISKWCKNNGVSIPDPSRQAQDIRSWEASNTSINSLGSYFNDFNSPVDLSNMSLGSLDTSFNSDASQGKTTRSSNLVLIKTRDNSQKHQAHTEIHDTDLMLLPQLHDLQWDSQCKVIQDLKDHLKSNSQAFVSVSAETFIEPLLRFLSNAYDLHDVEALRTGIQLLLEFVNNCRNGKTNLNEDTFIMLAIFLDSEVIGETLAIMEELSGYGFSKAKIAASSALTSILNILDSENKGFQQQAIRILYNLSFSGEVCPRMLSLRCIPKLLPFFKDRTLLRYCIYILKNLCDTEEGRNSVAETKGCISSVAEILETGNNEEQEHALAVLVSLCSRHPDYCKLVMHEDIITPLFYISQNGNDKGKESALELLHLLRDVNYVENEACPEPNINNSSRGSNSHPEENKSSKRSTFLKKLSLFSKSSSHASKAKR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2312 758 MobiDBLite consensus disorder prediction 712 758 - -
Ssu2g2312 758 SUPERFAMILY ARM repeat 431 701 IPR016024 -
Ssu2g2312 758 Pfam U-box domain 270 339 IPR003613 GO:0004842|GO:0016567
Ssu2g2312 758 SUPERFAMILY RING/U-box 265 346 - -
Ssu2g2312 758 MobiDBLite consensus disorder prediction 232 254 - -
Ssu2g2312 758 Gene3D - 430 750 IPR011989 -
Ssu2g2312 758 PANTHER U BOX DOMAIN-CONTAINING 9 742 - -
Ssu2g2312 758 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 742 - -
Ssu2g2312 758 MobiDBLite consensus disorder prediction 232 246 - -
Ssu2g2312 758 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Ssu2g2312 758 Pfam Kinesin-associated protein (KAP) 488 653 - -
Ssu2g2312 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 342 IPR013083 -
Ssu2g2312 758 CDD RING-Ubox_PUB 273 315 IPR045210 -
Ssu2g2312 758 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Ssu2g2312 758 MobiDBLite consensus disorder prediction 712 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2312 Ssu-Chr2 80238412 80241817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2312 1 705 U-box Gene Family AT4G36550 38.710 2.95e-152 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2312 - - gmx:100791627 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2312 2 80238412 80241817 Ssu6g2001 6 36709095 36713831 PCT